Hi, I'm performing a 10 ns molecular dynamics of a homodimer, using GROMACS. I have no problems during and after the simulation, since I have already analyzed the log files and performed the checking. I was able to see, without any problems, the whole concatenated trajectory file with VMD software. However, when I tried to visualize with PyMol, occurs some problems in the last frames, like wrong bonds and dismantlement of my dimer. I'm already use the parameters *-pbc mol* and *-pbc nojump* with trjconv. Any idea?
Thanks in advance, Mauricio
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