Chih-Ying Lin wrote:
Hi
1. After compiling, the two following files are created.
dsspcmbi
dsspcmbi.exe
2. The path of the DSSP file is /usr/local/bin/DSSP.
Both dsspcmbi and dsspcmbi.exe are in the file /usr/local/bin/DSSP.
"file" is a distinct concept from "directory".
3. So, the last step i type the command in my .profile.
setenv dssp /usr/local/bin/DSSP
export dssp= /usr/local/bin/DSSP
export PATH=$PATH:$DSSP
Is it correct ?
No. You are probably confusing C-shell and bash syntax, and need to be
aware that variable names are case sensitive.
4. I also have Gromacs in my MAC.
And I type the following command.
do_dssp -f 6LYZ-MD.xtc -s 6LYZ-MD.tpr -o secondary-structure.xpm -sc
secondary-structure.xvg
For running 5 minutes, the following files are created and DSSP still
keep running.
Is anything wrong here?
Probably. You need to follow the DSSP installation instructions more
precisely.
Please stop sending multiple emails with the same content. They won't
help you get a response :-)
Mark
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