Re: [gmx-users] another g_tune_pme problem

2012-04-02 Thread Carsten Kutzner

On Apr 1, 2012, at 8:01 PM, Albert wrote:

> Hello:
>   I am trying to test g_tune_pme in workstation by command:
> 
> g_tune_pme_d -v -s md.tpr -o bm.trr -cpi md.cpt -cpo bm.cpt -g bm.log -launch 
> -nt 16 &
> 
> but it stopped immediately with following logs. I complied gromacs with a -d 
> in each module such as mdrun_d and I aliased mdrun_d to mdrun in the shell. 
> However, my g_tune_pme still claimed that it cannot execute md_run..
Hi,

so what does benchtest.log say?

Carsten

> 
> thank you very much
> 
> 
> --log--
> back Off! I just backed up perf.out to ./#perf.out.5#
> Will test 3 tpr files.
> Will try runs with 4 - 8 PME-only nodes.
>   Note that the automatic number of PME-only nodes and no separate PME nodes 
> are always tested.
> 
> Back Off! I just backed up benchtest.log to ./#benchtest.log.5#
> 
> ---
> Program g_tune_pme_d, VERSION 4.5.5
> Source code file: gmx_tune_pme.c, line: 631
> 
> Fatal error:
> Cannot execute mdrun. Please check benchtest.log for problems!
> For more information and tips for troubleshooting, please check the GROMACS
> website at http://www.gromacs.org/Documentation/Errors
> ---
> 
> "Once Again Let Me Do This" (Urban Dance Squad)
> 
> -- 
> gmx-users mailing listgmx-users@gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at 
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-requ...@gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

--
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists


[gmx-users] another g_tune_pme problem

2012-04-01 Thread Albert

Hello:
  I am trying to test g_tune_pme in workstation by command:

g_tune_pme_d -v -s md.tpr -o bm.trr -cpi md.cpt -cpo bm.cpt -g bm.log 
-launch -nt 16 &


but it stopped immediately with following logs. I complied gromacs with 
a -d in each module such as mdrun_d and I aliased mdrun_d to mdrun in 
the shell. However, my g_tune_pme still claimed that it cannot execute 
md_run..


thank you very much


--log--
back Off! I just backed up perf.out to ./#perf.out.5#
Will test 3 tpr files.
Will try runs with 4 - 8 PME-only nodes.
  Note that the automatic number of PME-only nodes and no separate PME 
nodes are always tested.


Back Off! I just backed up benchtest.log to ./#benchtest.log.5#

---
Program g_tune_pme_d, VERSION 4.5.5
Source code file: gmx_tune_pme.c, line: 631

Fatal error:
Cannot execute mdrun. Please check benchtest.log for problems!
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
---

"Once Again Let Me Do This" (Urban Dance Squad)

-- 
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists