Re: [gmx-users] error compiling gmx 4.5 on Mac 10.6.4
Hi Alan, I've fixed that bug yesterday; the fix should be in yesterday's new beta. Thanks for the bug report, Sander On 31 Jul 2010, at 12:41 , Alan wrote: > Hi there, > > I am trying gmx 4.5 beta on Mac SL 10.6.4 with Fink, doing: > > ./configure CPPFLAGS="-I/sw/include" LDFLAGS="-L/sw/lib" --enable-shared > --with-gsl --with-x > > and then 'make' failed with: > > (cd .libs/libgmx.lax/libthread_mpi.a && ar x > /Users/alan/Downloads/gromacs-4.5-beta1/src/gmxlib/thread_mpi/.libs/libthread_mpi.a) > cc -dynamiclib -o .libs/libgmx.6.dylib .libs/3dview.o .libs/atomprop.o > .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/chargegroup.o > .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o > .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/ffscanf.o > .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmx_fatal.o > .libs/gmx_sort.o .libs/gmxcpp.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o > .libs/inputrec.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o > .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o > .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o > .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o > .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o > .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o > .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o > .libs/sfactor.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o > .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o > .libs/viewit.o .libs/warninp.o .libs/wgms.o .libs/wman.o .libs/writeps.o > .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o > .libs/gmx_matrix.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o > .libs/gmx_cyclecounter.o .libs/gmx_system_xdr.o .libs/md5.o .libs/vmdio.o > .libs/vmddlopen.o .libs/sighandler.o .libs/oenv.o .libs/gmxfio_rw.o > .libs/gmxfio_asc.o .libs/gmxfio_bin.o .libs/gmxfio_xdr.o > .libs/libgmx.lax/libnonbonded.a/nb_free_energy.o > .libs/libgmx.lax/libnonbonded.a/nb_generic.o > .libs/libgmx.lax/libnonbonded.a/nb_generic_cg.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel010.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel010_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel020.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel030.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel030_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel100.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel100_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel101.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel101_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel102.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel102_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel103.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel103_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel104.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel104_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel110.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel110_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel111.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel111_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel112.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel112_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel113.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel113_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel114.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel114_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel120.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel121.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel122.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel123.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel124.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel130.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel130_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel131.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel131_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel132.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel132_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel133.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel133_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel134.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel134_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel200.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel200_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel201.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel201_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel202.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel202_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel203.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel203_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel204.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel204_x86_64_sse.o > .libs/libgmx.lax/libnonbonded.a/nb_kernel2
[gmx-users] error compiling gmx 4.5 on Mac 10.6.4
Hi there, I am trying gmx 4.5 beta on Mac SL 10.6.4 with Fink, doing: ./configure CPPFLAGS="-I/sw/include" LDFLAGS="-L/sw/lib" --enable-shared --with-gsl --with-x and then 'make' failed with: (cd .libs/libgmx.lax/libthread_mpi.a && ar x /Users/alan/Downloads/gromacs-4.5-beta1/src/gmxlib/thread_mpi/.libs/libthread_mpi.a) cc -dynamiclib -o .libs/libgmx.6.dylib .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/chargegroup.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmx_fatal.o .libs/gmx_sort.o .libs/gmxcpp.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/inputrec.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/sfactor.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/warninp.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/gmx_matrix.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o .libs/gmx_system_xdr.o .libs/md5.o .libs/vmdio.o .libs/vmddlopen.o .libs/sighandler.o .libs/oenv.o .libs/gmxfio_rw.o .libs/gmxfio_asc.o .libs/gmxfio_bin.o .libs/gmxfio_xdr.o .libs/libgmx.lax/libnonbonded.a/nb_free_energy.o .libs/libgmx.lax/libnonbonded.a/nb_generic.o .libs/libgmx.lax/libnonbonded.a/nb_generic_cg.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel020.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel103.o .libs/libgmx.lax/libnonbonded.a/nb_kernel103_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel104.o .libs/libgmx.lax/libnonbonded.a/nb_kernel104_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel113.o .libs/libgmx.lax/libnonbonded.a/nb_kernel113_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel114.o .libs/libgmx.lax/libnonbonded.a/nb_kernel114_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel120.o .libs/libgmx.lax/libnonbonded.a/nb_kernel121.o .libs/libgmx.lax/libnonbonded.a/nb_kernel122.o .libs/libgmx.lax/libnonbonded.a/nb_kernel123.o .libs/libgmx.lax/libnonbonded.a/nb_kernel124.o .libs/libgmx.lax/libnonbonded.a/nb_kernel130.o .libs/libgmx.lax/libnonbonded.a/nb_kernel130_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel131.o .libs/libgmx.lax/libnonbonded.a/nb_kernel131_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel132.o .libs/libgmx.lax/libnonbonded.a/nb_kernel132_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel133.o .libs/libgmx.lax/libnonbonded.a/nb_kernel133_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel134.o .libs/libgmx.lax/libnonbonded.a/nb_kernel134_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel200.o .libs/libgmx.lax/libnonbonded.a/nb_kernel200_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel201.o .libs/libgmx.lax/libnonbonded.a/nb_kernel201_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel202.o .libs/libgmx.lax/libnonbonded.a/nb_kernel202_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel203.o .libs/libgmx.lax/libnonbonded.a/nb_kernel203_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel204.o .libs/libgmx.lax/libnonbonded.a/nb_kernel204_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel210.o .libs/libgmx.lax/libnonbonded.a/nb_kernel210_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel211.o .libs/libgmx.lax/libnonbonded.a/nb_kernel211_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel212.o .libs/libgmx.lax/libnonbonded.a/nb_kernel212_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel213.o .libs/libgmx.lax/libnonbonded.a/nb_kernel213_x86_64_sse.o .libs/libgmx.lax/libnonbonded.a/
