[gmx-users] frame in VMD

2013-06-03 Thread maggin
Hi, I use VMD to see GROMACS trajectory, I run 20ns md, there are 10,000,000
step, when load to VMD, it total 2777 frames. 

I don't known if there something wrong in it ? 

How to get the frame about 19532ps? 

Thank you very much! 

maggin



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Re: [gmx-users] frame in VMD

2013-06-03 Thread Mark Abraham
Probably, VMD tries to load the whole trajectory into memory, and that runs
out. You should be using trjconv to get a particular frame. Also see
http://www.gromacs.org/Documentation/How-tos/Reducing_Trajectory_Storage_Volume
to
avoid generating redundant information to throw away later.

Mark

On Mon, Jun 3, 2013 at 5:03 PM, maggin maggin.c...@gmail.com wrote:

 Hi, I use VMD to see GROMACS trajectory, I run 20ns md, there are
 10,000,000
 step, when load to VMD, it total 2777 frames.

 I don't known if there something wrong in it ?

 How to get the frame about 19532ps?

 Thank you very much!

 maggin



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 View this message in context:
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