Re: [gmx-users] gromacs demo
On 1/3/13 6:06 AM, amna khan wrote: hi all. i am a beginer user of ubuntu and gromacs i installed gormacs on ubuntu 12.10 and now want to run demo , i dont know how to run this correctly i do by typing cd /usr/share/gromacs/tutor/gmxdemo it gives nothing as output You changed into a directory; you didn't actually run anything. There's a script called 'demo' in that directory that you need to execute to get it to run. help me please in running the demo The demo is significantly less useful than the many tutorials provided online. http://www.gromacs.org/Documentation/Tutorials -Justin -- Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] gromacs demo
the command /usr/share/gromacs/tutor/gmxdemo/demo no such cooamnd found... cd /usr/share/gromacs/tutor/gmxdemo/demo permsion denied sudo /usr/share/gromacs/tutor/gmxdemo/demo comand not found i am not getting any results On Thu, Jan 3, 2013 at 4:19 PM, Justin Lemkul jalem...@vt.edu wrote: On 1/3/13 6:06 AM, amna khan wrote: hi all. i am a beginer user of ubuntu and gromacs i installed gormacs on ubuntu 12.10 and now want to run demo , i dont know how to run this correctly i do by typing cd /usr/share/gromacs/tutor/**gmxdemo it gives nothing as output You changed into a directory; you didn't actually run anything. There's a script called 'demo' in that directory that you need to execute to get it to run. help me please in running the demo The demo is significantly less useful than the many tutorials provided online. http://www.gromacs.org/**Documentation/Tutorialshttp://www.gromacs.org/Documentation/Tutorials -Justin -- ==**== Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justinhttp://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ==**== -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/**mailman/listinfo/gmx-usershttp://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/** Support/Mailing_Lists/Searchhttp://www.gromacs.org/Support/Mailing_Lists/Searchbefore posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/**Support/Mailing_Listshttp://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] gromacs demo
On 1/3/13 9:16 AM, amna khan wrote: the command /usr/share/gromacs/tutor/gmxdemo/demo no such cooamnd found... cd /usr/share/gromacs/tutor/gmxdemo/demo permsion denied You can't cd into a script. sudo /usr/share/gromacs/tutor/gmxdemo/demo comand not found i am not getting any results It seems like Gromacs is installed somewhere else or has restrictive permissions that prohibit you from accessing it. Like I said, better tutorial material exists and would probably be a better use of time. -Justin On Thu, Jan 3, 2013 at 4:19 PM, Justin Lemkul jalem...@vt.edu wrote: On 1/3/13 6:06 AM, amna khan wrote: hi all. i am a beginer user of ubuntu and gromacs i installed gormacs on ubuntu 12.10 and now want to run demo , i dont know how to run this correctly i do by typing cd /usr/share/gromacs/tutor/**gmxdemo it gives nothing as output You changed into a directory; you didn't actually run anything. There's a script called 'demo' in that directory that you need to execute to get it to run. help me please in running the demo The demo is significantly less useful than the many tutorials provided online. http://www.gromacs.org/**Documentation/Tutorialshttp://www.gromacs.org/Documentation/Tutorials -Justin -- ==**== Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justinhttp://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ==**== -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/**mailman/listinfo/gmx-usershttp://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/** Support/Mailing_Lists/Searchhttp://www.gromacs.org/Support/Mailing_Lists/Searchbefore posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/**Support/Mailing_Listshttp://www.gromacs.org/Support/Mailing_Lists -- Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] gromacs demo
Maybe you can try first another tutorials, eg. http://manuals.bioinformatics.ucr.edu/home/linux-basics On 01/03/2013 03:16 PM, amna khan wrote: the command /usr/share/gromacs/tutor/gmxdemo/demo no such cooamnd found... cd /usr/share/gromacs/tutor/gmxdemo/demo permsion denied sudo /usr/share/gromacs/tutor/gmxdemo/demo comand not found i am not getting any results -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
