Re: [gmx-users] ligand topology error

2013-02-01 Thread Justin Lemkul



On 2/1/13 9:37 AM, az kalsom wrote:

hi,

whenever, i Submit the molecule to ATB (
http://compbio.biosci.uq.edu.au/atb/index.py)
FOR BUILDING THE TOPOLOGY OF LIGAND, IT SAYS

Your job that was submitted at 2013-02-01 00:56:07 (RNME = _NGD) had at
least one error. Specifically, the QM calculation failed. The most likely
cause is that either: (1) the geometry was inappropriate; (2) the number of
hydrogen atoms or the net charge was inappropriate

what should i do this to remove the error?



Please read my previous reply to this same question.  This is not the 
appropriate forum for such questions.


-Justin

--


Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin


--
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists


[gmx-users] ligand topology error

2013-02-01 Thread az kalsom
hi,

whenever, i Submit the molecule to ATB (
http://compbio.biosci.uq.edu.au/atb/index.py)
FOR BUILDING THE TOPOLOGY OF LIGAND, IT SAYS

Your job that was submitted at 2013-02-01 00:56:07 (RNME = _NGD) had at
least one error. Specifically, the QM calculation failed. The most likely
cause is that either: (1) the geometry was inappropriate; (2) the number of
hydrogen atoms or the net charge was inappropriate

what should i do this to remove the error?
-- 
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists