[gmx-users] noxvgr
Hi, Suppose when I use gyrate, I want the output to be the eps, when I tried -noxvgr -w sounds I failed to get. I do not understand it well. I can get .xvg picture, and seems the gnuplot not easy to interpret and save it as .eps or png. Any idea? Thanks and best, lina -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] noxvgr
#ZHAO LINA# wrote: Hi, Suppose when I use gyrate, I want the output to be the eps, The only tool that produces .eps files is xpm2ps. when I tried -noxvgr -w Is -noxvgr even a correct option? It seems like if you want non-formatted output, you should use -xvg none in the command line. If you just want an .eps output file of the plot, use the normal XmGrace formatting (leave the command line -xvg alone) and save the output in that format. XmGrace should be capable of saving an .eps, and if not, you can take whatever image file format it gives you into Gimp and convert it. -Justin sounds I failed to get. I do not understand it well. I can get .xvg picture, and seems the gnuplot not easy to interpret and save it as .eps or png. Any idea? Thanks and best, lina -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
RE: [gmx-users] noxvgr
I suspect it might mine grace was wrong, when I tried to use save as, it has bugs, I will check this first. Thanks for your answering. lina From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf of Justin A. Lemkul [jalem...@vt.edu] Sent: Friday, November 19, 2010 10:15 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] noxvgr #ZHAO LINA# wrote: Hi, Suppose when I use gyrate, I want the output to be the eps, The only tool that produces .eps files is xpm2ps. when I tried -noxvgr -w Is -noxvgr even a correct option? It seems like if you want non-formatted output, you should use -xvg none in the command line. If you just want an .eps output file of the plot, use the normal XmGrace formatting (leave the command line -xvg alone) and save the output in that format. XmGrace should be capable of saving an .eps, and if not, you can take whatever image file format it gives you into Gimp and convert it. -Justin sounds I failed to get. I do not understand it well. I can get .xvg picture, and seems the gnuplot not easy to interpret and save it as .eps or png. Any idea? Thanks and best, lina -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] noxvgr
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 11/19/2010 03:03 PM, #ZHAO LINA# wrote: Hi, Suppose when I use gyrate, I want the output to be the eps, when I tried -noxvgr -w sounds I failed to get. I do not understand it well. I can get .xvg picture, and seems the gnuplot not easy to interpret and save it as .eps or png. Any idea? If you want to use gnuplot for the plotting you have to set the corresponding comment character set datafile commentchars #...@! Put this line in your $HOME/.gnuplot file that is read every time you start gnuplot, or set it every time you want to plot xvg files and you will have no trouble. /Flo Thanks and best, lina - -- Florian Dommert Dipl.-Phys. Institute for Computational Physics University Stuttgart Pfaffenwaldring 27 70569 Stuttgart Phone: +49(0)711/685-6-3613 Fax: +49-(0)711/685-6-3658 EMail: domm...@icp.uni-stuttgart.de Home: http://www.icp.uni-stuttgart.de/~icp/Florian_Dommert -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAkzmiD4ACgkQLpNNBb9GiPmTvwCgpvTeF6kDM6Ri4HhtG15fwUfW kqIAniWR0aNfFvZ+OQDxx8z0kgbygAen =JtXr -END PGP SIGNATURE- -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] noxvgr
#ZHAO LINA# wrote: I suspect it might mine grace was wrong, when I tried to use save as, it has bugs, I will check this first. Exporting to different formats is not done with Save As but rather Print (using Print Setup to choose the proper format). Simply saving your plot creates an XmGrace file that only it can load. -Justin Thanks for your answering. lina From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf of Justin A. Lemkul [jalem...@vt.edu] Sent: Friday, November 19, 2010 10:15 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] noxvgr #ZHAO LINA# wrote: Hi, Suppose when I use gyrate, I want the output to be the eps, The only tool that produces .eps files is xpm2ps. when I tried -noxvgr -w Is -noxvgr even a correct option? It seems like if you want non-formatted output, you should use -xvg none in the command line. If you just want an .eps output file of the plot, use the normal XmGrace formatting (leave the command line -xvg alone) and save the output in that format. XmGrace should be capable of saving an .eps, and if not, you can take whatever image file format it gives you into Gimp and convert it. -Justin sounds I failed to get. I do not understand it well. I can get .xvg picture, and seems the gnuplot not easy to interpret and save it as .eps or png. Any idea? Thanks and best, lina -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
RE: [gmx-users] noxvgr
It works (cool). Thanks for both of you. lina From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf of Justin A. Lemkul [jalem...@vt.edu] Sent: Friday, November 19, 2010 10:23 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] noxvgr #ZHAO LINA# wrote: I suspect it might mine grace was wrong, when I tried to use save as, it has bugs, I will check this first. Exporting to different formats is not done with Save As but rather Print (using Print Setup to choose the proper format). Simply saving your plot creates an XmGrace file that only it can load. -Justin Thanks for your answering. lina From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf of Justin A. Lemkul [jalem...@vt.edu] Sent: Friday, November 19, 2010 10:15 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] noxvgr #ZHAO LINA# wrote: Hi, Suppose when I use gyrate, I want the output to be the eps, The only tool that produces .eps files is xpm2ps. when I tried -noxvgr -w Is -noxvgr even a correct option? It seems like if you want non-formatted output, you should use -xvg none in the command line. If you just want an .eps output file of the plot, use the normal XmGrace formatting (leave the command line -xvg alone) and save the output in that format. XmGrace should be capable of saving an .eps, and if not, you can take whatever image file format it gives you into Gimp and convert it. -Justin sounds I failed to get. I do not understand it well. I can get .xvg picture, and seems the gnuplot not easy to interpret and save it as .eps or png. Any idea? Thanks and best, lina -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
