On Wed, Nov 7, 2012 at 11:24 PM, Marcelo Depolo <marcelodep...@gmail.com> wrote: > I thought that at first, but other softwares run in parallel. If there's a > problem, it' s somehow in the PBS. > > My guess is that my PBS don't allow the LAM library "see" others nodes. But > I have no clue where the problem could be.
I would be very surprised if this is true. The "nornal" sequences of events during submission process is the following: 1) The system looks into your submission script and finds out the resource requirements. 2) If the requirements are met, the job gets "R" status and the remaining commands (which do not start with #PBS) are executed. 3) If there is a problem with the message parallel interface or the [scientific] code, the job dies with some MPI-specific error message, or with code-specific message, or usually both of them. What I see in your report, your "error" message comes from PBS, i.e. neither MPI nor gromacs are launched. -- Dr. Vitaly V. Chaban MEMPHYS - Center for Biomembrane Physics Department of Physics, Chemistry and Pharmacy University of Southern Denmark Campusvej 55, 5230 Odense M, Denmark -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
