Re: [gmx-users] Problem on i7
Hi, Ubuntu has also gromacs-mpich and gromacs-openmpi which contain mdrun_mpi to run in parallel. Roland On Sat, Feb 27, 2010 at 1:53 PM, Maurício Menegatti Rigo < mauriciomr1...@gmail.com> wrote: > Hi Roland, > > thanks for your answer. Actually, I installed the GROMACS from Synaptic > package manager. I dont know if the manager compile with the "--enable-mpi" > option. I'll try to reinstall with this option and see what happens. > > Thank you very much!! > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309 -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Re: [gmx-users] Problem on i7
Hi Roland, thanks for your answer. Actually, I installed the GROMACS from Synaptic package manager. I dont know if the manager compile with the "--enable-mpi" option. I'll try to reinstall with this option and see what happens. Thank you very much!! -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Re: [gmx-users] Problem on i7
Hi, this happens if the mdrun hasn't been compiled with "configure --enable-mpi". Roland On Sat, Feb 27, 2010 at 1:04 PM, Maurício Menegatti Rigo < mauriciomr1...@gmail.com> wrote: > Hi, > > I'm facing a problem where the GROMACS can't distribute the job that I send > between the 8 nodes of my computer (i7 920). Actually, when I send the job > with the command line "mpirun -np 8 mdrun (...)" each CPU receive the > information and perform the job by itself, without distribution. Someone > that face this problem (or that know hou to fix it) could help me? > > Thanks !! > > > > > > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309 -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
