Re: FOS Newsletter Excerpts

2001-08-23 Thread Peter Suber

 Welcome to the Free Online Scholarship Newsletter
 August 23, 2001


Introducing the Guide to the FOS Movement

I'm very pleased to announce that I've finished the first draft of my Guide
to the FOS Movement.  This is a guide to the terminology, acronyms,
initiatives, standards, technologies, and players in the movement to
publish scholarly literature on the internet and make it available to
readers free of charge.

Now that it's online, I can revise, enlarge, and update it, which will be
much easier than writing the present draft.  I welcome your suggestions.  I
have about 30 entries waiting to include, but don't hesitate to report
omissions.  I also welcome corrections and comments of any kind.

The guide has many purposes.  It should help you find background on
unexplained terms or names you encounter in research on any FOS-related
topic.  For the same reason, it will allow me to use terms and names here
in the newsletter without explaining each one every time.  Above all, it
should make it easier for specialists from one sector (e.g. research,
libraries, publishing) to understand the contributions to this movement
made by specialists from other sectors. This movement isn't only
multi-disciplinary, encompassing all the academic disciplines, but also
multi-industrial, drawing on libraries and universities and such varied
economic sectors beyond the academy as publishing, telecommunications,
software engineering, philanthropy, and government. It is also
multi-national, building on the work of individuals and organizations from
around the world. Without special study one cannot appreciate the
contributions of all these players to the FOS movement. I hope the guide
brings recognition to the contributors and understanding to those hoping to
see the big picture.

Guide to the FOS Movement
http://www.earlham.edu/~peters/fos/guide.htm

--

The Ellen Roche story

Ellen Roche was a healthy 24 year old lab technician at the Johns Hopkins
(JH) Asthma Center.  She volunteered to take part in an experiment to
understand the natural defenses of healthy people against asthma.  Roche
was part of a group that inhaled hexamethonium, a drug which induced a mild
asthma attack.  Physicians stood by in case of complications and to measure
how the subjects responded to the asthma attack.  Within 24 hours of
inhaling the drug, Roche had lost one-third of her lung capacity.  Within a
month she was dead.

The consent form she signed warned of coughing, dizziness, and tightness in
the chest, but not death.  It called hexamethonium a "medication" although
its approval by the FDA (as a treatment for high blood pressure) had been
withdrawn in 1972.

Here's the FOS connection:  Dr. Alkis Togias, the director of the
experiment, apparently limited his hexamethonium research to one
contemporary textbook and PubMed.

The use of hexamethonium in the 1950's to treat high blood pressure created
an evidentiary trail revealing some disturbing risks.  Several articles
published in print journals during the 1950's showed that hexamethonium
could cause fatal lung inflammation.  Unfortunately, PubMed's coverage
starts in the mid-1960's.  When the FDA withdrew its approval of
hexamethonium in 1972, it cited the drug's "substantial potential
toxicity".  Unfortunately, PubMed covers medical research, not FDA rulings.

The JH internal investigation found literature on the dangers of
hexamethonium in Google and Yahoo.  Medical librarians who subscribe to the
MedLib listserv found relevant information in online sources other than
PubMed.

At least one expert witness has already zeroed in on the sloppiness of the
research.  Quoting Dr. Frederick Wolff, professor emeritus at the George
Washington School of Medicine:  "This is just laziness.  What happened is
not just an indictment of one researcher, but of a system in which people
don't bother to research the literature anymore."

Ellen Roche died on June 2, and the Roche family has apparently not yet
filed a lawsuit.  However, JH still faced a serious sanction.  On July 19
the federal Office for Human Research Protection (OHRP) suspended all JH
research on human subjects.  This halted 2,400+ ongoing experiments with
15,000+ human subjects.  The disruption was administratively chaotic,
devastating to research, and potentially grave for patients participating
in experiments who suddenly found their medication withheld.  Perhaps for
this reason the OHRP lifted the suspension three days later, though with
the requirement that experiments meet new safeguards.

What does this case imply about PubMed and FOS generally in high-stakes
research?  See the next item below for some comments.

Eva Perkins, Johns Hopkins' Tragedy:  Could Librarians Have Prevented a Death?
http://www.infotoday.com/newsbreaks/nb010806-1.htm

Report of FDA investigation
http://www.fda.gov/ora/frequent/483s/JohnHopkins483.html

Report of Johns Hopkins internal investigation
http://www.hopkinsmedicine.org/press/2001/JULY/r

Re: Elsevier's ChemWeb Preprint Archive

2001-08-23 Thread Weeks, James (ELSLON)
Dear Jim,

Thank you very much for your response.

To date, I haven't noticed any particular effort to increase the number of
discussion threads. In fact, I think more noticeable inaccuracies could
occur from "test" threads and reproduced threads. I suppose these effects
might become less significant as the discussions grow but in this sense I
agree that the other indicators might be more reliable.

In my opinion, the most robust indicators of subsequent publication would
indeed be "views" and "ranking". In fact, the articles with the most
discussion could be those which are still works-in-progress or which are
more controversial. We monitor the views on the number of unique users who
have viewed the article. Therefore, it really should not be possible to
manipulate this data. Similarly, authors are not permitted to rank their own
article and users can only rank an article once.

I hope that this helps to clarify.

Best regards,

James



James Weeks 
Chemistry Preprint Server Coordinator
 
ChemWeb Inc. 
84 Theobald's Road 
London WC1X 8RR 
United Kingdom 

Tel:+44 (0) 20 7611 4480 
Fax:+44 (0) 20 7611 4301 
Email:  james.we...@chemweb.com 

http://preprint.chemweb.com 
http://www.chemweb.com
___

 


 


 



-Original Message-
From: Jim Till [mailto:t...@uhnres.utoronto.ca]
Sent: 19 August 2001 12:29
To: american-scientist-open-access-fo...@listserver.sigmaxi.org
Subject: Re: Elsevier's ChemWeb Preprint Archive


On Fri, 17 Aug 2001, James Weeks wrote [in part]:

[jw]> each article that is submitted to the CPS has its own discussion
[jw]> group where users can comment on the content of the article. It
[jw]> is encouraging that there has been sustained use of these
[jw]> discussion groups. For example, 45 of the 282 preprints submitted
[jw]> now have more than 3 threads in their discussions. I think it will
[jw]> also be interesting to monitor how this feature is used.

Of the three indicators now available via CPS (views per preprint, score
on a 1-5 scale, and number of discussion threads), it's not clear to me
which indicator might be the least susceptible to manipulation.  All seem
quite vulnerable to such manipulation.

If any of these three indicators is found to be a reasonably reliable and
valid predictor of subsequent publication in a "brand name" journal, then
its vulnerability to attempts at manipulation (e.g. via deliberate
attempts to initiate more discussion threads) might become a major
concern.

I'd be very interested in any comments that you may have about this
"manipulation issue".

[jw]> It is our intention that the CPS will be [OAI] compliant within the
[jw]> next two months.

Good news!

Jim Till
University of Toronto