Re: [gpc-informatics] #144: ETL Annotated Data Dictionary form required by PCORI

[GPC Informatics]

#144: ETL Annotated Data Dictionary form required by PCORI
-+
 Reporter:  campbell |   Owner:  ngraham
 Type:  task |  Status:  assigned
 Priority:  major|   Milestone:  popmednet
Component:  data-stds|  Resolution:
 Keywords:  ETL Data Dictionary  |  Blocked By:  145, 146
 Blocking:   |
-+

Comment (by ngraham):

 I created a [https://bitbucket.org/njgraham/pcori-annotated-data-
 dictionary BitBucket repository] to keep track of the code created for
 this.  I haven't gotten too far yet, but started filling in CDM view for
 KUMC using [ticket:145#comment:3 Dan's example].

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
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Wisconsin's ETL Manager

[Wilson Nathan]

Hi Jim,

I will be acting as Wisconsin's ETL manager.

N

Nathan S. Wilson
Ontologist
Health Information Management Center (HIMC)
__
301 S. Westfield Rd - Suite 320
Madison, WI  53717
Phone: (608) 890-5780
eMail: nwil...@uwhealth.org



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KUMC Medication Mapping: show and tell (Wed July 23 at 1:00 CDT)

[Nathan Graham]

All,

I've scheduled an online meeting with Brian Lund from the Iowa City VA Health 
Care System and Dr. Brittany Melton who is an assistant professor from the KU 
School of Pharmacy.  The purpose of the meeting is to show and tell how we at 
Kansas University Medical Center have organized medications in i2b2 using 
RxNorm and to discuss some of the challenges we've faced along the way.

We decided to extend an invitation to the gpc-dev mailing list as well.



HERON Medication Mapping Review

1. Please join my meeting.
https://global.gotomeeting.com/meeting/join/263714221

2. Use your microphone and speakers (VoIP) - a headset is recommended. Or, 
call in using your telephone.
United States: +1 (646) 749-3131
Access Code: 263-714-221
Audio PIN: Shown after joining the meeting

Meeting ID:263-714-221

My plan based on previous e-mail discussion is to show you our medication 
hierarchy and perhaps discuss strategies for mapping medications that don't map 
explicitly to RxNorm and therefore end up in the "Other Medications" folder in 
the i2b2 hierarchy.  If anyone is interested, we can also review the SQL code 
used to build the hierarchy and map the medications.  I'm happy to discuss 
other topics that you may be interested in as well.

References:

* GPC Ticket #78: "Shared GPC RxNORM/NDFRT medications 
ontology"

* KUMC Informatics Wiki page - 
"MedMapping"

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Re: [gpc-informatics] #114: Milestone 2.7 GPC harmonizes with PCORI CDM V1.0

[GPC Informatics]

#114: Milestone 2.7 GPC harmonizes with PCORI CDM V1.0
--+
 Reporter:  campbell  |   Owner:  campbell
 Type:  task  |  Status:  accepted
 Priority:  major |   Milestone:  initial-data-
Component:  data-stds |  domains
 Keywords:  PCORI CDM V1, GPC data standards  |  Resolution:
 Blocking:|  Blocked By:  17, 23, 67,
  |  120
--+

Comment (by campbell):

 As part of report to PCORI for milestones 2.1, 2.5 and 2.7; it seems
 logical to me that we consolidate our reporting requirements and simplify
 procedures for creating aggregate GPC stats.  I have enclosed a draft
 revision of the PCORI form for discussion today
 Jim

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
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Revised LOINC metadata on PCORI deskotp

[Hickman, Hubert B]

I have placed a revised LOINC metadata export file in the GPC i2b2 metadata 
folder (loincv3_unmc_export.csv).  This file has the LOINC hierarchy starting 
at the Laboratory Measurements and Clinical Measurements levels - the per 
discussions of sometime back.

I have uploaded a table_access_loincv3.csv which is an excerpt from our 
TABLE_ACCESS table showing the two entries for this file.

Hubert Hickman
P/A III
The Nebraska Medical Center, Zip 5030
huhick...@nebraskamed.com
(402) 559-4838




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