Re: [gpc-informatics] #31: data elements for ALS cohort characterization

[GPC Informatics]

#31: data elements for ALS cohort characterization
-+
 Reporter:  dconnolly|   Owner:  jhe
 Type:  design-issue |  Status:  assigned
 Priority:  major|   Milestone:  data-agg1
Component:  data-stds|  Resolution:
 Keywords:  als-cohort methods-core  |  Blocked By:  63
 Blocking:   |
-+
Changes (by dconnolly):

 * cc: gchen2@… (added)


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Re: [gpc-informatics] #114: Milestone 2.7 GPC harmonizes with PCORI CDM V1.0

[GPC Informatics]

#114: Milestone 2.7 GPC harmonizes with PCORI CDM V1.0
--+
 Reporter:  campbell  |   Owner:  campbell
 Type:  task  |  Status:  accepted
 Priority:  major |   Milestone:  initial-data-
Component:  data-stds |  domains
 Keywords:  PCORI CDM V1, GPC data standards  |  Resolution:
 Blocking:|  Blocked By:  17, 23, 67,
  |  120
--+

Comment (by lv):

 Marshfield has a draft posted:
 https://pcornet.centraldesktop.com/c4gpc/file/33747295/

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Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

[GPC Informatics]

#56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...
--+
 Reporter:  dconnolly |   Owner:  bokov
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  data-quality-plan
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:
 Blocking:|
--+

Comment (by dconnolly):

 I was curious what the [http://indivohealth.org/ indivo] folks use for
 testing and I found:

   - [https://github.com/chb/sample_ccdas Repository of Sample CCDA
 Documents]

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Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

[GPC Informatics]

#56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...
--+
 Reporter:  dconnolly |   Owner:  bokov
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  data-quality-plan
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:
 Blocking:|
--+

Comment (by dconnolly):

 I realized last night that the unit tests for the Data Builder (#134 #87)
 include code to generate a mock i2b2 star schema. It's currently very
 limited, but I had an idea:

 Make a spreadsheet with diagnoses, the labs etc. used to diagnose them,
 and the meds etc. used to treat them (insulin).

 ||= Condition =||= Indication =||= Treatment  =||
 || Diabetes||A1C   ||   Insulin||
 || Diabetes||BMI   ||  ||
 || MI  ||   Pulse  ||   Aspirin||
 || Sepsis  ||  ||   Antibiotic ||

 And use those as the basis to generate test encounters.

 Refinements:
   - value distributions for labs etc. (mean, std dev)
   - probabilities to go with the relationships
   - sequences of related encounters: normal results, abnormal, diagnosis,
 treatment, normal

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