gpc-dev agenda 2 Dec

[Dan Connolly]

Note to the scribe: I already made the google doc for gpc-dev 2 
Dec.


  1.  Convene, take roll, review records and plan next meeting

 *   ​Meeting ID and access code: 
686-845-717; call +1 
(267) 507-0008

 *   meeting notes 
(#12): Nov 18 notes 
OK? today's scribe: ??

 *   roll: all 10 
DevTeams 
represented? comments on the agenda?

*   Today’s agenda is organized by site, around the work-by-site 
report.

 *   KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW

*   regrets: Tom Mish @ WISC

 *   next meeting: Dec 9. scribe volunteer? alternate chair?

*   Note new GotoMeeting coordinates in-coming

  2.  Thu-Fri 22-23 Jan 2015 in San Antonio 
HackathonTwo

 *   remote participation

 *   reminder: fill out the attendance 
survey

  3.  Roadmap: over-driving our headlights

  4.  CMH

 *   #90 (Diagnoses Modifiers for data attribution) 
reopened

*   Nate @ CMH will take a shot at integrating feedback so far and 
supplying metadata in i2b2 format.

  5.  KUMC

 *   Ticket #197 (REDCap data dictionary for ALS survey) 
created

 *   #160 GPC, CDM refresh

*   #145 transform i2b2 to CDM

*   #109 CDM as i2b2 metadata

 *   #192 GPC REDCap for governance workflow

*   #159 GPC REDCap for data sharing

   *   #175 federated login

*   #124 tool to copy query between i2b2 sites

 *   #185 Tumor Registry Ontology

 *   #172 UMN cancer tumor registry counts to babel

 *   #178 last visit - blocked by #155 Encounter types

  6.  MCRF

 *   due date for PopMedNed nodes? (#161 etc.) milestone for DRN Query 
goal?

  7.  MCW

 *   #87 data builder - milestone:bc-survey-cohort-def due Dec 16

  8.  UIOWA

 *   #193 quality measures for Obesity Cohort

*   notes from 
Prakash

 *   #168 tumor registry?

 *   #162 PopMedNet (see MCRF)

  9.  UMN

 *   #186 query by numerical constraints - on milestone:data-domains2, due 
Nov 30. Better guestimate?

 *   #158 usable view of LOINC lab terms

 *   #119 Federated breast cancer query with manual term alignment

*   fwd ref #87 under MCW

 *   #139 Insurance status

  10. UNMC

 *   #67 demographics

 *   #186 (Querying age by numerical 
constraints)

*   PR: can we have a GPC Demographics folder on babel like the others?

   *   HH: yes, I will move to creation of GPC demographics
Justin will verify

*   Justin: age unit conversion days/years/etc.: performance impact?

   *   HH: we haven’t seen any performance penalty due to unit 
conversion. facts are stored in days. Conversion seems to happen before the SQL 
is generated.

  *   HH to send generated SQL

   *   HH will point to documentation and will experimentally flip the 
server side conversion flag to measure any performance difference

 *   #193 quality measures for Obesity Cohort

*   notes from 
Prakash

 *   #155 Encounter types, #120 encounter attributes

 *   #186 age

 *   #182 LOINC in CDM

  11. UTHSCSA

 *   #173 REDCap for ALS

 *   GPC Terminology V1 (medication 
modifiers)   #199

*   Alex to follow up by email w.r.t. requirements for medication 
modifiers.

 *   #33 obesity cohort characterization (tracked by MethodsCore)

  12. UTSW

 *   #165 PopMedNed node

  13. WISC

 *   1st quarterly QA results: 
#180, #188 
closed

 *   #196 (Should the "active patient" be based on visits or encounters?) 
created by mish

--
Dan


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Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

[GPC Informatics]

#56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...
--+
 Reporter:  dconnolly |   Owner:  dconnolly
 Type:  enhancement   |  Status:  assigned
 Priority:  minor |   Milestone:  data-domains2
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:
 Blocking:|
--+
Changes (by dconnolly):

 * owner:  bokov => dconnolly
 * priority:  major => minor


Comment:

 > So this would be very useful, but it's not blocking progress on any of
 the more urgent tasks. Can we give this a lower priority?
  -- [http://listserv.kumc.edu/pipermail/gpc-dev/2014q4/000588.html Alex 6
 Oct]

 Meanwhile, I should share what I did for testing the data builder (#87).

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
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Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

[GPC Informatics]

#87: Deploy, document R Data Builder demo service
--+---
 Reporter:  dconnolly |   Owner:  gkowalski
 Type:  task  |  Status:  assigned
 Priority:  major |   Milestone:  bc-survey-cohort-def
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:  134, 179
 Blocking:  119   |
--+---
Changes (by dconnolly):

 * milestone:  data-agg1 => bc-survey-cohort-def


Comment:

 Plans for the breast cancer survey (KeyGoalTracking#bc-survey) are in
 flux, and in some versions, deploying the data builder at each site is
 critical path. So conservatively, I'm moving this to that milestone.

--
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gpc-informatics 
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gpc-dev 2 Dec: scribe volunteer?

[Dan Connolly]

Any volunteers?

My 10-sided die nominates MCW (5), UIOWA (3), WISC (4).

sites in order of recent scribing:

  1.  UNMC 18 Nov, 14 Oct, ...
  2.  MCRF 11 Nov, 30 Sep, ...
  3.  UTHSCSA 4 Nov, 7 Oct, ...
  4.  KUMC 28 Oct, 23 Sep, ...
  5.  WISC 21 Oct, 12 Aug
  6.  CMH 16 Sep, 22 July
  7.  UMN 26 Aug
  8.  MCW 19 Aug
  9.  UTSW 20 May
  10. UIOWA 29 Apr

--
Dan

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[gpc-informatics] Batch modify: #38, #53, #65, #71, #121, #129, #130

[GPC Informatics]

Batch modification to #38, #53, #65, #71, #121, #129, #130 by dconnolly:
priority to minor

Comment:
I'm reviewing DevTeams#WorkBySite and I realize none of these etl-dev tickets 
is currently critical-path for the group.


--
Tickets URL: 

gpc-informatics 
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