Canceled: gpc-dev weekly teleconference

2014-12-23 Thread Dan Connolly
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ORGANIZER;CN=Dan Connolly:MAILTO:dconno...@kumc.edu
ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=gpc-dev@l
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ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=Russ Wait
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ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=Vincent L
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ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=John Stei
 nmetz:MAILTO:jsteinm...@kumc.edu
DESCRIPTION;LANGUAGE=en-US:This event has been canceled for: Dec 23\, 2014\
 n\nWhen: Dec 23\, 2014 11:00:00 AM\nWhere: https://global.gotomeeting.com/
 meeting/join/686845717\n
SUMMARY;LANGUAGE=en-US:Canceled: gpc-dev weekly teleconference
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Re: [gpc-informatics] #203: Process to finalize a terminology

2014-12-23 Thread GPC Informatics
#203: Process to finalize a terminology
---+
 Reporter:  lv |   Owner:  preeder
 Type:  problem|  Status:  new
 Priority:  major  |   Milestone:  data-domains2
Component:  data-stds  |  Resolution:
 Keywords:  alignment  |  Blocked By:
 Blocking: |
---+
Changes (by dconnolly):

 * milestone:  data-quality2 = data-domains2


--
Ticket URL: 
http://informatics.gpcnetwork.org/trac/Project/ticket/203#comment:2
gpc-informatics http://informatics.gpcnetwork.org/
Greater Plains Network - Informatics
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Re: [gpc-informatics] #145: transform (ETL) GPC i2b2 data to PCORNet CDM

2014-12-23 Thread Campbell, James R
The GPC c_dimcode for the PCORI paths need to be instantiated with the standard 
LOINC and ICD-9-CM codes as we have agreed to be standards for the network and 
I have published with PCORI DSSNI.  Hubert is loading our final copy from UNMC 
and the GPC model for PCORI should mirror that...I thought that he had pushed a 
copy to Nathan?
Jim

James R. Campbell MD
campb...@unmc.edu
Office: 402-559-7505
Secretary: 402-559-7299
Pager: 402-888-1230

 On Dec 17, 2014, at 11:19 AM, GPC Informatics d...@madmode.com wrote:

 #145: transform (ETL) GPC i2b2 data to PCORNet CDM
 --+
 Reporter:  dconnolly |   Owner:  ngraham
 Typethought th:  enhancement for|  Status:  assigned
 Priority:  major |   Milestone:  data-domains2
 Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:  109
 Blocking:  160   |
 --+

 Comment (by ngraham):

 Dan and I sketched out some next steps after talking with Dr. Waitman this
 morning:
 * Install the PCORI CDM in i2b2 ontology on the test environment at KU
 * Utilizing `c_fullname` and `c_dimcode` in the i2b2 terms table, make it
 such that querying for a PCORI CDM ontology item actually uses the paths
 for the equivalent HERON path.
   - so, as per [https://bitbucket.org/njgraham/pcori-annotated-data-
 dictionary/src/1c1c0f980377bbd1adbe839edf84d8de92f5b1de/heron_to_pcori.csv?at=default
 heron_to_pcori.csv], a `c_fullname` like
 `\\PCORI_\PCORI\ENCOUNTER\ENC_TYPE\AV\` will have a `c_dimcode` like
 `\i2b2\Visit Details\Encounter Type\102\`.
 - Or, really, the path common to GPC long-term.
 * Then, we can likely use code similar to [https://bitbucket.org/njgraham
 /pcori-annotated-data-dictionary pcori-annotated-data-dictionary] to build
 CDM tables using PCORI CDM paths.

 --
 Ticket URL: 
 http://informatics.gpcnetwork.org/trac/Project/ticket/145#comment:13
 gpc-informatics http://informatics.gpcnetwork.org/
 Greater Plains Network - Informatics
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