RE: GPC_TERMS Table

2015-04-21 Thread Verhagen, Laurel A 
Phillip,

Your plan sounds reasonable (and generous too). It seems like a risk to not 
have a single location to find current, approved ontologies. Posted files are 
nice due to the timestamp, but exporting from babel isn't any more/less work as 
long as it's clear what to grab.

Thanks,
Laurel

From: gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Phillip Reeder
Sent: Tuesday, April 21, 2015 12:40 PM
To: gpc-dev@listserv.kumc.edu
Subject: GPC_TERMS Table

I believe the GPC_TERMS table has the most current demographics, diagnosis, 
medications, and vital signs terminologies.  For Diagnosis, I just moved over 
Hubert's updated modifiers.

I propose that this table become the home for the Approved GPC Terminologies.

So, that would take care of
Demographics
Diagnoses
Medications
Vital Signs

Needing:
Encounter - GPC_ENCOUNTER_TERMS, is this the table to use?  I don't have access 
to the table with my account so I can't copy it into GPC_TERMS.
Procedures - Is there a finalized approved metadata?  If so where?
Lab Tests - Still no approved lab terminology.

Anything else?

Does this sound like a reasonable plan?

I'll volunteer to continue to manage this table, but I will need input as to 
which additional terminologies we are ready to add.

Phillip



UT Southwestern


Medical Center



The future of medicine, today.


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Re: [gpc-informatics] #238: Q1 2015 QA Query

2015-04-21 Thread GPC Informatics 
#238: Q1 2015 QA Query
--+
 Reporter:  mish  |   Owner:  mish
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  data-quality3
Component:  data-quality  |  Resolution:
 Keywords:  data-quality  |  Blocked By:
 Blocking:  232, 262  |
--+

Comment (by ngraham):

 Replying to [comment:21 mish]:
  I think that Nathan Graham as some feedback he'd like to give yet.
 Tom,

 I don't have feedback other than what's noted in comment:17 (and, much
 more detail in ticket:262#comment:8).  Most comments are suggestions for
 next time, but there are a few things under Possible Bugs that I
 thought would be worth review.

--
Ticket URL: 
http://informatics.gpcnetwork.org/trac/Project/ticket/238#comment:22
gpc-informatics http://informatics.gpcnetwork.org/
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RE: GPC-Dev Agenda 4-21

2015-04-21 Thread Munns, Michael B 
UNMC 6.4.4

Michael Munns
Database Analyst
402-559-3821

From: gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Bos, Angela
Sent: Monday, April 20, 2015 5:44 PM
To: Dan Connolly; Apathy, Nate; gpc-dev@listserv.kumc.edu
Subject: RE: GPC-Dev Agenda 4-21

Sorry for the late request, but could we add the following topic for the 
obesity survey:

What version of Redcap are you running? How soon could your site potentially 
achieve 6.1.x?

We would like to use Redcap “access code” functionality introduced in 6.1.0. 
Used in conjunction with participant lists, it allows a user to enter a general 
survey URL, then requires them to enter a non-case-sensitive 9-character access 
code to go to their unique survey link.

-Angela | UTHSCSA


From: 
gpc-dev-boun...@listserv.kumc.edumailto:gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Dan Connolly
Sent: Monday, April 20, 2015 3:30 PM
To: Apathy,Nate; gpc-dev@listserv.kumc.edumailto:gpc-dev@listserv.kumc.edu
Subject: RE: GPC-Dev Agenda 4-21

Thanks for getting the ball rolling, Nate. I went over our business and made 
some adjustments.

Note in particular that I dropped items where I couldn't find an update shared 
with the group.  Reminder: if anyone wants something on the agenda, please send 
mail or update a ticket before 10am Monday. You can, of course, ask to have 
something added when we review the agenda at the beginning of the call, but 
things work better if materials are available in advance.


1.Convene, take roll, review records and plan next meeting.

a.​Meeting ID and access code: 
817-393-381https://global.gotomeeting.com/meeting/join/817393381; call +1 
(571) 317-3131

b.roll: all 10 
DevTeamshttps://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams 
represented?

  i.KUMC, CMH, UIOWA, WISC, MCW, 
MCRF, UMN, UNMC, UTHSCSA, UTSW, (MU), (IU)

ii.Reminder - put institution after 
your name on the GoToMeeting (preferences)

c.meeting notes 
(#12https://informatics.gpcnetwork.org/trac/Project/ticket/12): previous 
notes OK? today's scribe: Nate A (Cerner/CMH) comments on the agenda? chair 
dropped items where no update was available as of ~T-24hrs

  i.recent tickets opened/closed 
FYI:

1.#165:https://informatics.gpcnetwork.org/trac/Project/ticket/165 
PopMedNet @ UTSW - closed

2.#270http://informatics.gpcnetwork.org/trac/Project/ticket/270 - Port Q1 
QA query to Oracle opened

3.note also recent ticket comments 
reporthttps://informatics.gpcnetwork.org/trac/Project/report/13

d.Next Meeting April 28th: scribe?

2.#78 Shared GPC RxNORM/NDFRT medications 
ontologyhttps://informatics.gpcnetwork.org/trac/Project/ticket/78 re-opened; 
also #236https://informatics.gpcnetwork.org/trac/Project/ticket/236

a.Nate sent list of non-SCDF 
codeshttp://listserv.kumc.edu/pipermail/gpc-dev/2015q2/001525.html to group

1.#158 Usable LOINC Labs - March 27 
commenthttps://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:28 
proposes that  Jan 19 
detailshttps://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:20 
suffice

a.KUMC’s experience is positive so far, though we haven’t released

b.is what’s on babel consistent with Jan 19 details?

1.
milestone:data-quality3https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality3

a.#270 (Port Q1 QA query to Oracle) 
closedhttps://informatics.gpcnetwork.org/trac/Project/ticket/270#comment:2

1.milestone:bc-survey-cohort-def 
(depgraphhttps://informatics.gpcnetwork.org/trac/Project/depgraph/ticket/227):

a.#271https://informatics.gpcnetwork.org/trac/Project/ticket/271 IRB-wait

b.#264https://informatics.gpcnetwork.org/trac/Project/ticket/264 confirm 
governance and workflow: ~7 sites responded

1.Milestone: 
obesity-survey-defhttps://informatics.gpcnetwork.org/trac/Project/milestone/obesity-survey-def

a.#252 test results from 
wischttps://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:5

1.
milestone:cohort-char1https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1

a.#258https://informatics.gpcnetwork.org/trac/Project/ticket/258 
volunteer to take a whack at breast cancer treatment from NAACCR?

1.#242https://informatics.gpcnetwork.org/trac/Project/ticket/242 - Nate 
A. asks Apr 16 “where can we find the necessary attachments and code to attempt 
this? ...”

  1.  milestone:data-domains3 currently has no due date; is that OK? are there 
any customers waiting?


--
Dan

From: 
gpc-dev-boun...@listserv.kumc.edumailto:gpc-dev-boun...@listserv.kumc.edu 
[gpc-dev-boun...@listserv.kumc.edu] on behalf of Apathy,Nate 
[nate.apa...@cerner.com]
Sent: Monday, April 20, 2015 9:50 AM
To:

Re: [gpc-informatics] #238: Q1 2015 QA Query

2015-04-21 Thread GPC Informatics 
#238: Q1 2015 QA Query
--+
 Reporter:  mish  |   Owner:  mish
 Type:  enhancement   |  Status:  closed
 Priority:  major |   Milestone:  data-quality3
Component:  data-quality  |  Resolution:  fixed
 Keywords:  data-quality  |  Blocked By:
 Blocking:  232, 262  |
--+
Changes (by mish):

 * status:  assigned = closed
 * resolution:   = fixed


--
Ticket URL: 
http://informatics.gpcnetwork.org/trac/Project/ticket/238#comment:24
gpc-informatics http://informatics.gpcnetwork.org/
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RE: GPC-Dev Agenda 4-21

2015-04-21 Thread Verhagen, Laurel A 
MCRF currently uses v6.1.2

Thanks, 
Laurel

-Original Message-
From: gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Taylor, Bradley
Sent: Tuesday, April 21, 2015 9:04 AM
To: Bos, Angela; Dan Connolly; Apathy, Nate; gpc-dev@listserv.kumc.edu
Subject: Re: GPC-Dev Agenda 4-21

MCW is running version 6.4.4



Regards,

Brad



From: Bos, Angela

Date: Monday, April 20, 2015 at 5:43 PM

To: Dan Connolly, Apathy, Nate, 
gpc-dev@listserv.kumc.edumailto:gpc-dev@listserv.kumc.edu

Subject: RE: GPC-Dev Agenda 4-21



Sorry for the late request, but could we add the following topic for the 
obesity survey:



What version of Redcap are you running? How soon could your site potentially 
achieve 6.1.x?



We would like to use Redcap “access code” functionality introduced in 6.1.0. 
Used in conjunction with participant lists, it allows a user to enter a general 
survey URL, then requires them to enter a non-case-sensitive 9-character access 
code to go to their unique survey link.



-Angela | UTHSCSA





From: 
gpc-dev-boun...@listserv.kumc.edumailto:gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Dan Connolly

Sent: Monday, April 20, 2015 3:30 PM

To: Apathy,Nate; gpc-dev@listserv.kumc.edumailto:gpc-dev@listserv.kumc.edu

Subject: RE: GPC-Dev Agenda 4-21



Thanks for getting the ball rolling, Nate. I went over our business and made 
some adjustments.



Note in particular that I dropped items where I couldn't find an update shared 
with the group.  Reminder: if anyone wants something on the agenda, please send 
mail or update a ticket before 10am Monday. You can, of course, ask to have 
something added when we review the agenda at the beginning of the call, but 
things work better if materials are available in advance.







1.Convene, take roll, review records and plan next meeting.



a.​Meeting ID and access code: 
817-393-381https://urldefense.proofpoint.com/v2/url?u=https-3A__global.gotomeeting.com_meeting_join_817393381d=BQIGaQc=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIsr=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5m=-qcf79tjFV3AoWaLEzwkEdNeEPJrH3NJfg-2gjMv5bks=z3TNHi1QAHx4Qi3opunx6JE9zDU3vbR9ownMVC0R9M0e=
 ; call +1 (571) 317-3131



b.roll: all 
10DevTeamshttps://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_wiki_DevTeamsd=BQIGaQc=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIsr=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5m=-qcf79tjFV3AoWaLEzwkEdNeEPJrH3NJfg-2gjMv5bks=eRDiyGFllO51uKgOXIuIYspKklYS3k_DrHk-hJcAM7Ee=
  represented?



  i.KUMC, CMH, UIOWA, WISC, MCW, 
MCRF, UMN, UNMC, UTHSCSA, UTSW, (MU), (IU)



ii.Reminder - put institution after 
your name on the GoToMeeting (preferences)



c.meeting notes 
(#12https://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_ticket_12d=BQIGaQc=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIsr=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5m=-qcf79tjFV3AoWaLEzwkEdNeEPJrH3NJfg-2gjMv5bks=tYzGDMxPbce1zQ3wOKxs-zF9L9-2Q8M-ooj8QHW1RYUe=
 ): previous notes OK? today's scribe: Nate A (Cerner/CMH) comments on the 
agenda? chair dropped items where no update was available as of ~T-24hrs



   .recent tickets opened/closed 
FYI:



1.
#165:https://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_ticket_165d=BQIGaQc=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIsr=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5m=-qcf79tjFV3AoWaLEzwkEdNeEPJrH3NJfg-2gjMv5bks=x8I35IXEuS7yppzAnB7pHGEnc99MA55DbFdX8-vh9XEe=
  PopMedNet @ UTSW - closed



2.
#270https://urldefense.proofpoint.com/v2/url?u=http-3A__informatics.gpcnetwork.org_trac_Project_ticket_270d=BQIGaQc=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIsr=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5m=-qcf79tjFV3AoWaLEzwkEdNeEPJrH3NJfg-2gjMv5bks=GmK0hamvik08PCboKzZnnqcYRNb_k24k4kjqmCyLCNoe=
  - Port Q1 QA query to Oracle opened



3.note also recent ticket comments 
reporthttps://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_report_13d=BQIGaQc=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIsr=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5m=-qcf79tjFV3AoWaLEzwkEdNeEPJrH3NJfg-2gjMv5bks=3xXjNou2ROzqnwkI289U3VgkAtwUkOhutwn-r12TKQge=
 



d.Next Meeting April 28th: scribe?



2.#78 Shared GPC RxNORM/NDFRT medications 
ontologyhttps://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_ticket_78d=BQIGaQc=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIsr=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5m=-qcf79tjFV3AoWaLEzwkEdNeEPJrH3NJfg-2gjMv5bks=EukYtNOWkZEAKDoOa5h-suQc2JuGKsAnM7OGovkZWXse=
  re-opened;

Re: [gpc-informatics] #238: Q1 2015 QA Query

2015-04-21 Thread GPC Informatics 
#238: Q1 2015 QA Query
--+
 Reporter:  mish  |   Owner:  mish
 Type:  enhancement   |  Status:  assigned
 Priority:  major |   Milestone:  data-quality3
Component:  data-quality  |  Resolution:
 Keywords:  data-quality  |  Blocked By:
 Blocking:  232, 262  |
--+

Comment (by ngraham):

 Replying to [comment:22 ngraham]:
  Replying to [comment:21 mish]:
   I think that Nathan Graham as some feedback he'd like to give yet.
  Tom,
 
  I don't have feedback other than what's noted in comment:17 (and, much
 more detail in ticket:262#comment:8).

 Well, no more feedback except I do plan to tweak paths and re-run the
 query (ticket:262#comment:12).  I plan to attach the list of paths that
 we're missing at KU today.

--
Ticket URL: 
http://informatics.gpcnetwork.org/trac/Project/ticket/238#comment:23
gpc-informatics http://informatics.gpcnetwork.org/
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Re: GPC-Dev Agenda 4-21

2015-04-21 Thread Taylor, Bradley 
MCW is running version 6.4.4

Regards,
Brad

From: Bos, Angela
Date: Monday, April 20, 2015 at 5:43 PM
To: Dan Connolly, Apathy, Nate, 
gpc-dev@listserv.kumc.edumailto:gpc-dev@listserv.kumc.edu
Subject: RE: GPC-Dev Agenda 4-21

Sorry for the late request, but could we add the following topic for the 
obesity survey:

What version of Redcap are you running? How soon could your site potentially 
achieve 6.1.x?

We would like to use Redcap “access code” functionality introduced in 6.1.0. 
Used in conjunction with participant lists, it allows a user to enter a general 
survey URL, then requires them to enter a non-case-sensitive 9-character access 
code to go to their unique survey link.

-Angela | UTHSCSA


From: 
gpc-dev-boun...@listserv.kumc.edumailto:gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Dan Connolly
Sent: Monday, April 20, 2015 3:30 PM
To: Apathy,Nate; gpc-dev@listserv.kumc.edumailto:gpc-dev@listserv.kumc.edu
Subject: RE: GPC-Dev Agenda 4-21

Thanks for getting the ball rolling, Nate. I went over our business and made 
some adjustments.

Note in particular that I dropped items where I couldn't find an update shared 
with the group.  Reminder: if anyone wants something on the agenda, please send 
mail or update a ticket before 10am Monday. You can, of course, ask to have 
something added when we review the agenda at the beginning of the call, but 
things work better if materials are available in advance.



1.Convene, take roll, review records and plan next meeting.

a.​Meeting ID and access code: 
817-393-381https://global.gotomeeting.com/meeting/join/817393381; call +1 
(571) 317-3131

b.roll: all 
10DevTeamshttps://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams 
represented?

  i.KUMC, CMH, UIOWA, WISC, MCW, 
MCRF, UMN, UNMC, UTHSCSA, UTSW, (MU), (IU)

ii.Reminder - put institution after 
your name on the GoToMeeting (preferences)

c.meeting notes 
(#12https://informatics.gpcnetwork.org/trac/Project/ticket/12): previous 
notes OK? today's scribe: Nate A (Cerner/CMH) comments on the agenda? chair 
dropped items where no update was available as of ~T-24hrs

   .recent tickets opened/closed 
FYI:

1.#165:https://informatics.gpcnetwork.org/trac/Project/ticket/165 
PopMedNet @ UTSW - closed

2.#270http://informatics.gpcnetwork.org/trac/Project/ticket/270 - Port Q1 
QA query to Oracle opened

3.note also recent ticket comments 
reporthttps://informatics.gpcnetwork.org/trac/Project/report/13

d.Next Meeting April 28th: scribe?

2.#78 Shared GPC RxNORM/NDFRT medications 
ontologyhttps://informatics.gpcnetwork.org/trac/Project/ticket/78 re-opened; 
also #236https://informatics.gpcnetwork.org/trac/Project/ticket/236

.  Nate sent list of non-SCDF 
codeshttp://listserv.kumc.edu/pipermail/gpc-dev/2015q2/001525.html to group

3.#158 Usable LOINC Labs - March 27 
commenthttps://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:28 
proposes that  Jan 19 
detailshttps://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:20 
suffice

.  KUMC’s experience is positive so far, though we haven’t released

a.is what’s on babel consistent with Jan 19 details?

4.
milestone:data-quality3https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality3

.  #270 (Port Q1 QA query to Oracle) 
closedhttps://informatics.gpcnetwork.org/trac/Project/ticket/270#comment:2

5.milestone:bc-survey-cohort-def 
(depgraphhttps://informatics.gpcnetwork.org/trac/Project/depgraph/ticket/227):

.  #271https://informatics.gpcnetwork.org/trac/Project/ticket/271 IRB-wait

a.#264https://informatics.gpcnetwork.org/trac/Project/ticket/264 confirm 
governance and workflow: ~7 sites responded

6.Milestone: 
obesity-survey-defhttps://informatics.gpcnetwork.org/trac/Project/milestone/obesity-survey-def

.  #252 test results from 
wischttps://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:5

7.
milestone:cohort-char1https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1

.  #258https://informatics.gpcnetwork.org/trac/Project/ticket/258 
volunteer to take a whack at breast cancer treatment from NAACCR?

8.#242https://informatics.gpcnetwork.org/trac/Project/ticket/242 - Nate 
A. asks Apr 16 “where can we find the necessary attachments and code to attempt 
this? ...”

  1.  milestone:data-domains3 currently has no due date; is that OK? are there 
any customers waiting?


--
Dan

From:gpc-dev-boun...@listserv.kumc.edumailto:gpc-dev-boun...@listserv.kumc.edu
 [gpc-dev-boun...@listserv.kumc.edumailto:gpc-dev-boun...@listserv.kumc.edu] 
on behalf of Apathy,Nate [nate.apa...@cerner.commailto:nate.apa...@cerner.com]
Sent: Monday, April 20, 2015 9:50 AM
To:

Re: GPC-Dev Agenda 4-21

2015-04-21 Thread Justin Dale 
Minnesota - Version 6.0.18

Regards,

Justin Dale
Manager - Research Development and Support
University of Minnesota
Academic Health Center - Office of Information Systems
Phone: 612.624.9747
Fax: 612.624.7458
jd...@umn.edu

On Tue, Apr 21, 2015 at 10:42 AM, Thomas F Mish m...@wisc.edu wrote:

  Wisconsin is at 5.9.mumble...

 I don't currently have an ETA for getting to 6.1.x.  We tend to stick with
 LTS releases by policy. Without digging up my REDCap wiki username and
 password, does anyone know what version that would be?

 -TM


 On 4/21/2015 9:09 AM, Munns, Michael B wrote:

  UNMC 6.4.4



 Michael Munns

 Database Analyst

 402-559-3821



 *From:* gpc-dev-boun...@listserv.kumc.edu [
 mailto:gpc-dev-boun...@listserv.kumc.edu
 gpc-dev-boun...@listserv.kumc.edu] *On Behalf Of *Bos, Angela
 *Sent:* Monday, April 20, 2015 5:44 PM
 *To:* Dan Connolly; Apathy, Nate; gpc-dev@listserv.kumc.edu
 *Subject:* RE: GPC-Dev Agenda 4-21



 Sorry for the late request, but could we add the following topic for the
 obesity survey:



 What version of Redcap are you running? How soon could your site
 potentially achieve 6.1.x?



 We would like to use Redcap “access code” functionality introduced in
 6.1.0. Used in conjunction with participant lists, it allows a user to
 enter a general survey URL, then requires them to enter a
 non-case-sensitive 9-character access code to go to their unique survey
 link.



 -Angela | UTHSCSA





 *From:* gpc-dev-boun...@listserv.kumc.edu [
 mailto:gpc-dev-boun...@listserv.kumc.edu
 gpc-dev-boun...@listserv.kumc.edu] *On Behalf Of *Dan Connolly
 *Sent:* Monday, April 20, 2015 3:30 PM
 *To:* Apathy,Nate; gpc-dev@listserv.kumc.edu
 *Subject:* RE: GPC-Dev Agenda 4-21



 Thanks for getting the ball rolling, Nate. I went over our business and
 made some adjustments.

 Note in particular that I dropped items where I couldn't find an update
 shared with the group.  Reminder: if anyone wants something on the agenda,
 please send mail or update a ticket before 10am Monday. You can, of course,
 ask to have something added when we review the agenda at the beginning of
 the call, but things work better if materials are available in advance.

  1.Convene, take roll, review records and plan next meeting.

 a.​Meeting ID and access code: 817-393-381
 https://global.gotomeeting.com/meeting/join/817393381; call +1 (571)
 317-3131

 b.roll: all 10 DevTeams
 https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams
 represented?

   i.KUMC, CMH, UIOWA, WISC,
 MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, (MU), (IU)

 ii.Reminder - put institution
 after your name on the GoToMeeting (preferences)

 c.meeting notes (#12
 https://informatics.gpcnetwork.org/trac/Project/ticket/12): previous
 notes OK? today's scribe: Nate A (Cerner/CMH) comments on the agenda? *
 chair dropped items where no update was available as of ~*T-24hrs

   i.recent tickets
 opened/closed FYI:

 1.#165: https://informatics.gpcnetwork.org/trac/Project/ticket/165
 PopMedNet @ UTSW - closed

 2.#270 http://informatics.gpcnetwork.org/trac/Project/ticket/270 -
 Port Q1 QA query to Oracle opened

 3.note also recent ticket comments report
 https://informatics.gpcnetwork.org/trac/Project/report/13

 d.Next Meeting April 28th: scribe?

 2.#78 Shared GPC RxNORM/NDFRT medications ontology
 https://informatics.gpcnetwork.org/trac/Project/ticket/78 re-opened;
 also #236 https://informatics.gpcnetwork.org/trac/Project/ticket/236

 a.Nate sent list of non-SCDF codes
 http://listserv.kumc.edu/pipermail/gpc-dev/2015q2/001525.html to group

 1.#158 Usable LOINC Labs - March 27 comment
 https://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:28
 proposes that  Jan 19 details
 https://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:20
 suffice

 a.KUMC’s experience is positive so far, though we haven’t released

 b.is what’s on babel consistent with Jan 19 details?

 1.milestone:data-quality3
 https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality3

 a.*#270* (Port Q1 QA query to Oracle) closed
 https://informatics.gpcnetwork.org/trac/Project/ticket/270#comment:2

 1.milestone:bc-survey-cohort-def (depgraph
 https://informatics.gpcnetwork.org/trac/Project/depgraph/ticket/227):

 a.#271 https://informatics.gpcnetwork.org/trac/Project/ticket/271
 IRB-wait

 b.#264 https://informatics.gpcnetwork.org/trac/Project/ticket/264
 confirm governance and workflow: ~7 sites responded

 1.Milestone: obesity-survey-def
 https://informatics.gpcnetwork.org/trac/Project/milestone/obesity-survey-def

 a.#252 test results from wisc
 https://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:5

 1.milestone:cohort-char1
 https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1

 a.#258

Re: [gpc-informatics] #238: Q1 2015 QA Query

2015-04-21 Thread GPC Informatics 
#238: Q1 2015 QA Query
--+
 Reporter:  mish  |   Owner:  mish
 Type:  enhancement   |  Status:  closed
 Priority:  major |   Milestone:  data-quality3
Component:  data-quality  |  Resolution:  fixed
 Keywords:  data-quality  |  Blocked By:
 Blocking:  232, 262  |
--+

Comment (by mish):

 There's no more feedback about the existing query at this point. There's
 been some conversation about mismatching variable names, but I can
 accomodate that since we've ended up with me entering these datasets by
 hand.

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Re: GPC-Dev Agenda 4-21

2015-04-21 Thread Thomas F Mish 

Wisconsin is at 5.9.mumble...

I don't currently have an ETA for getting to 6.1.x.  We tend to stick 
with LTS releases by policy. Without digging up my REDCap wiki username 
and password, does anyone know what version that would be?


-TM

On 4/21/2015 9:09 AM, Munns, Michael B wrote:


UNMC 6.4.4

Michael Munns

Database Analyst

402-559-3821

*From:*gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] *On Behalf Of *Bos, Angela

*Sent:* Monday, April 20, 2015 5:44 PM
*To:* Dan Connolly; Apathy, Nate; gpc-dev@listserv.kumc.edu
*Subject:* RE: GPC-Dev Agenda 4-21

Sorry for the late request, but could we add the following topic for 
the obesity survey:


What version of Redcap are you running? How soon could your site 
potentially achieve 6.1.x?


We would like to use Redcap “access code” functionality introduced in 
6.1.0. Used in conjunction with participant lists, it allows a user to 
enter a general survey URL, then requires them to enter a 
non-case-sensitive 9-character access code to go to their unique 
survey link.


-Angela | UTHSCSA

*From:*gpc-dev-boun...@listserv.kumc.edu 
mailto:gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] *On Behalf Of *Dan Connolly

*Sent:* Monday, April 20, 2015 3:30 PM
*To:* Apathy,Nate; gpc-dev@listserv.kumc.edu 
mailto:gpc-dev@listserv.kumc.edu

*Subject:* RE: GPC-Dev Agenda 4-21

Thanks for getting the ball rolling, Nate. I went over our business 
and made some adjustments.


Note in particular that I dropped items where I couldn't find an 
update shared with the group.  Reminder: if anyone wants something on 
the agenda, please send mail or update a ticket before 10am Monday. 
You can, of course, ask to have something added when we review the 
agenda at the beginning of the call, but things work better if 
materials are available in advance.


1.Convene, take roll, review records and plan next meeting.

a.​Meeting ID and access code: 817-393-381 
https://global.gotomeeting.com/meeting/join/817393381; call +1 (571) 
317-3131


b.roll: all 10DevTeams 
https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeamsrepresented? 



i.KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, (MU), (IU)

ii.Reminder - put institution after your name on the GoToMeeting 
(preferences)


c.meeting notes (#12 
https://informatics.gpcnetwork.org/trac/Project/ticket/12): previous 
notes OK? today's scribe: Nate A (Cerner/CMH) comments on the agenda? 
/chair dropped items where no update was available as of ~/T-24hrs


i.recent tickets opened/closed FYI:

1.#165: 
https://informatics.gpcnetwork.org/trac/Project/ticket/165PopMedNet 
@ UTSW - closed


2.#270 http://informatics.gpcnetwork.org/trac/Project/ticket/270- 
Port Q1 QA query to Oracle opened


3.note also recent ticket comments report 
https://informatics.gpcnetwork.org/trac/Project/report/13


d.Next Meeting April 28th: scribe?

2.#78 Shared GPC RxNORM/NDFRT medications ontology 
https://informatics.gpcnetwork.org/trac/Project/ticket/78re-opened; 
also #236 https://informatics.gpcnetwork.org/trac/Project/ticket/236


a.Nate sent list of non-SCDF codes 
http://listserv.kumc.edu/pipermail/gpc-dev/2015q2/001525.htmlto group


1.#158 Usable LOINC Labs - March 27 comment 
https://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:28proposes 
that Jan 19 details 
https://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:20suffice


a.KUMC’s experience is positive so far, though we haven’t released

b.is what’s on babel consistent with Jan 19 details?

1.milestone:data-quality3 
https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality3


a./#270/(Port Q1 QA query to Oracle) closed 
https://informatics.gpcnetwork.org/trac/Project/ticket/270#comment:2


1.milestone:bc-survey-cohort-def (depgraph 
https://informatics.gpcnetwork.org/trac/Project/depgraph/ticket/227):


a.#271 
https://informatics.gpcnetwork.org/trac/Project/ticket/271IRB-wait


b.#264 
https://informatics.gpcnetwork.org/trac/Project/ticket/264confirm 
governance and workflow: ~7 sites responded


1.Milestone: obesity-survey-def 
https://informatics.gpcnetwork.org/trac/Project/milestone/obesity-survey-def


a.#252 test results from wisc 
https://informatics.gpcnetwork.org/trac/Project/ticket/252#comment:5


1.milestone:cohort-char1 
https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1


a.#258 
https://informatics.gpcnetwork.org/trac/Project/ticket/258volunteer 
to take a whack at breast cancer treatment from NAACCR?


1.#242 https://informatics.gpcnetwork.org/trac/Project/ticket/242- 
Nate A. asks Apr 16 “where can we find the necessary attachments and 
code to attempt this? ...”


 2. milestone:data-domains3 currently has no due date; is that OK? are
there any customers waiting?



--
Dan



*From:*gpc-dev-boun...@listserv.kumc.edu 
mailto:gpc-dev-boun...@listserv.kumc.edu

Re: [gpc-informatics] #238: Q1 2015 QA Query

2015-04-21 Thread GPC Informatics 
#238: Q1 2015 QA Query
--+
 Reporter:  mish  |   Owner:  mish
 Type:  enhancement   |  Status:  closed
 Priority:  major |   Milestone:  data-quality3
Component:  data-quality  |  Resolution:  fixed
 Keywords:  data-quality  |  Blocked By:
 Blocking:  232, 262  |
--+

Comment (by ngraham):

 Replying to [comment:23 ngraham]:
  I plan to attach the list of paths that we're missing at KU today.
 As promised, see [https://bitbucket.org/njgraham/pcori-
 qa/src/ba7146d99bb413f7cc322118f4d0a9f76ea4f1a3/path_map.csv?at=KUMC_paths
 pcori-qa/path_map.csv] for the list of paths that I've tweaked (or, see
 [https://bitbucket.org/njgraham/pcori-
 qa/commits/ba7146d99bb413f7cc322118f4d0a9f76ea4f1a3?at=KUMC_paths#chg-
 Q1_2015_Quality_Query.sql Q1_2015_Quality_Query.sql] for the in-line code
 changes).

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Re: [gpc-informatics] #158: usable view of LOINC lab terms

2015-04-21 Thread GPC Informatics 
#158: usable view of LOINC lab terms
-+
 Reporter:  rwaitman |   Owner:  dconnolly
 Type:  enhancement  |  Status:  accepted
 Priority:  major|   Milestone:  data-domains3
Component:  data-stds|  Resolution:
 Keywords:   |  Blocked By:
 Blocking:   |
-+
Changes (by dconnolly):

 * owner:  nateapathy = dconnolly
 * status:  assigned = accepted


Comment:

 KUMC to report experience with Jan 19 design (comment:20)

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Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2015-04-21 Thread GPC Informatics 
#90: Diagnoses Modifiers for data attribution
--+
 Reporter:  campbell  |   Owner:  huhickman
 Type:  design-issue  |  Status:  closed
 Priority:  major |   Milestone:  data-domains3
Component:  data-stds |  Resolution:  fixed
 Keywords:|  Blocked By:
 Blocking:  70, 91, 216   |
--+
Changes (by dconnolly):

 * status:  assigned = closed
 * resolution:   = fixed


Comment:

 LV, PR, DC concur. sold.

 detail:

 {{{
 modifier
 level3/level
 applied_path\i2b2\DiagnosesV3\%/applied_path
 
key\\i2b2_DiagnosesV3\modifier_dx\encounter_diagnosis\enctr_dx_discharge\/key
 fullname\modifier_dx\encounter_diagnosis\enctr_dx_discharge\/fullname
 nameEncounter Diagnosis - Discharge/name
 visualattributesDA /visualattributes
 synonym_cdN/synonym_cd
 totalnum xmlns:xsi=http://www.w3.org/2001/XMLSchema-
 instance xsi:nil=true /
 basecodeDX|ENC:DISCHARGE/basecode
 facttablecolumnMODIFIER_CD/facttablecolumn
 tablenameMODIFIER_DIMENSION/tablename
 columnnameMODIFIER_PATH/columnname
 columndatatypeT/columndatatype
 operatorLIKE/operator
 dimcode\modifier_dx\encounter_diagnosis\enctr_dx_discharge\/dimcode
 comment /
 tooltipEncounter Diagnosis - Discharge/tooltip
 /modifier
 }}}

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Re: [gpc-informatics] #242: CDM V2 SNOMED CT Conditions compliance

2015-04-21 Thread GPC Informatics 
#242: CDM V2 SNOMED CT Conditions compliance
-+---
 Reporter:  campbell |   Owner:  huhickman
 Type:  enhancement  |  Status:  assigned
 Priority:  minor|   Milestone:  morning-star
Component:  data-stds|  Resolution:
 Keywords:   |  Blocked By:
 Blocking:   |
-+---
Changes (by dconnolly):

 * owner:  dconnolly = huhickman
 * status:  new = assigned


Comment:

 Hubert to share (details that I just barely grok)

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