RE: [gpc-informatics] #545: Study sample and DM sample definition for next-d

[Bernard Black]

We at Northwestern are still developing the definitions of which variables to 
capture, and exactly how.
Once we propose a set of definitions, we will have a better sense of timeline.


Bernie

*
Bernard S. Black
Chabraja Professor, Northwestern University
Pritzker Law School and Kellogg School of Management
375 East Chicago Ave., Chicago IL 60611
bbl...@northwestern.edu
tel:  law:  312-503-2784; Kellogg 847-491-5049; cell: 847-807-9599
papers on SSRN at:  http://ssrn.com/author=16042



-Original Message-
From: GPC Informatics [mailto:d...@madmode.com] 
Sent: Monday, March 13, 2017 10:49 AM
To: Dan Connelly ; mei...@kumc.edu; jmcc...@unmc.edu
Cc: btay...@mcw.edu; ngra...@kumc.edu; bzscho...@kumc.edu; Bernard Black 
; gpc-dev@listserv.kumc.edu; 
mwennb...@kumc.edu; abel@nm.org; Lindsey Lynne Cook 

Subject: Re: [gpc-informatics] #545: Study sample and DM sample definition for 
next-d

#545: Study sample and DM sample definition for next-d
--+
 Reporter:  dconnolly |   Owner:  meiliu
 Type:  task  |  Status:  assigned
 Priority:  major |   Milestone:  next-d
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:  546, 551, 571
 Blocking:|
--+

Comment (by meiliu):

 Dan,

 Yes, I am aware of the timeline. Alona indicated in her March 8 message  that 
it would be okay if one GPC site can provide the sample definition  table by 
middle of April. I'll look into your code and try to get the  desired table 
base off of KUMC data to Alona by middle of April.

 --Mei

--
Ticket URL: 
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gpc-dev 14 March agenda and meeting notes

[Dan Connolly]

What else for tomorrow?

  *   ​14 Mar gpc-dev shared 
notes;
 scribe: IU




  1.  Convene, take roll, review records and plan next meeting(s)

 *   11:00am Central Time.
​Meeting ID and access code: 
817-393-381; call +1 
(571) 317-3131

 *   roll: all 12 
DevTeams 
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW 
(regrets Reeder), MU, IU
Reminder - put institution after your name in GoToMeeting preferences

*   today's scribe: IU

 *   comments on the agenda? On last week’s notes? 
(#12)
Recent tickets 
opened/closed - FYI 
(i.e. not intended for discussion)

*   #354 (First wave of recruiting ADAPTABLE patients) 
closed 
fixed

*   #587 (SNOW SHRINE spoke install at UNMC) 
 created; 
closed duplicate

 *   Next Meetings: 21 Mar: scribe: MU?
Note LRU schedule in 
#12

*   #460 
Reeder would like “to discuss and show the SNOW Shrine with the SCIHLS 
ontologies” 21 Mar

*   Integrating hospital billing: UHC ETL 
scripts - 
preferred date to discuss?

  2.  
Milestone:cohort-char-bc-db
 due 13 Mar

 *   #297 (collect breast cancer data from GPC sites for linking with 
surveys, ...) 
closed 
fixed

 *   #584 
Possible blended registry 
record (WISC) - 
REDCap updated?

  3.  
Milestone:snow-shrine-1
 due 13 Mar

 *   #460 SNOW 
SHRINE node at UTSW 
next week. regrets Reeder

 *   #459 MCRF 
experience with SHRINE on Microsoft platform

 *   #531 SNOW 
SHRINE node at MCRF with SCILHS PCORnet 
ontology

 *   #575 SNOW 
SHRINE 1.20.1 install for 
IU

  4.  
Milestone:snow-shrine-2
 due ~Apr

 *   #280, 
MEDICATIONS metadata for SCILHS
“waiting for responses from GPC.” but ticket is still assigned to jay.pedersen 
- recruit >= 2 reviewers.

  5.  
Milestone:cdm-cycle3
 checkpoint ~3 Apr

 *   #580 Data 
Characterization - Cycle 2, Refresh 2 
Tracking - review 
status

 *   #579 Data 
Characterization - Cycle 3 
Tracking - review 
status

 *   #549 
discharge info disconnected from parts of some EI 
visits

 *   CDM V3.X 
PROCEDURES

  6.  
Milestone:cohort-char1
 due 17 Apr?

 *   #570 - IRB 
update on track for ~1 month after 13 Feb?
1 month has come and gone. So 17 Apr is at-risk.




--
Dan

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RE: CDM V3.X procedures (was: #583: SNOW SCILHS Lab Metadata Expansion)

[Dan Connolly]

Jim and everybody,

It would help me if you could give one or two specific examples of each of 
these:
 - Clinic and hospital E and professional procedures with CPT coding

Am I missing something there? Isn't this the ordinary CPT code stuff we already 
do?
This is already in EDC tables and charts, yes?

 - Clinic and hospital surgery and other diagnostic and therapeutic
   procedures with ICD-10-PCS coding

Likewise, this doesn't look new to me.

 - Laboratory orders (with LOINC or CPT coding)

LOINC isn't new is it? Oh... orders, not results. OK. That would be tricky. We 
have lots of lab order data, but it's all in local coding.

 - Medications administered (clinic or hospital) with NDC coding

I have never seen NDC codes for medications adminstered in the KU Epic system.

-- 
Dan


From: GPC Informatics [d...@madmode.com]
Sent: Sunday, March 12, 2017 5:02 PM
To: campb...@unmc.edu; Dan Connolly
Cc: gpc-dev@listserv.kumc.edu
Subject: Re: [gpc-informatics] #583: SNOW SCILHS Lab Metadata Expansion

#583: SNOW SCILHS Lab Metadata Expansion
---+---
 Reporter:  campbell   |   Owner:  campbell
 Type:  enhancement|  Status:  assigned
 Priority:  major  |   Milestone:  snow-
Component:  data-stds  |  shrine-2
 Keywords:  LOINC Lab_PRO_CM SCILHS all-sites  |  Resolution:
 Blocking: |  Blocked By:
---+---

Comment (by campbell):

 Data characterization calls the past 3-4 weeks with DRN OC have indicated
 that CDM V3.X PROCEDURES should support when available:
 Clinic and hospital E and professional procedures with CPT coding
 Clinic and hospital surgery and other diagnostic and therapeutic
 procedures with ICD-10-PCS coding
 Laboratory orders (with LOINC or CPT coding)

 May support when available:
 Medications administered (clinic or hospital) with NDC coding

 If we agree as a network we want to comply and we want this data in SNOW
 SHRINE and have standard extracts to CDM PROCEDURES, then we need to agree
 on SCILHS modifier extensions for medication administration and for orders

--
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Re: [gpc-informatics] #545: Study sample and DM sample definition for next-d

[GPC Informatics]

#545: Study sample and DM sample definition for next-d
--+
 Reporter:  dconnolly |   Owner:  meiliu
 Type:  task  |  Status:  assigned
 Priority:  major |   Milestone:  next-d
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:  546, 551, 571
 Blocking:|
--+
Changes (by dconnolly):

 * cc: Abel.Kho@…, lindsey.cook@… (added)
 * owner:  tmcmahon => meiliu


Comment:

 Mei,

 As you may have seen, Tamara let me know that [[GROUSE]] remains a higher
 priority for me. And we're still standing by for an update from MCW on
 #551. And milestone:cdm-cycle3 is a priority in the April timeframe. So as
 far as I'm aware, no GPC site is in a position to produce a sample
 definition table in the mid-April timeframe requested in Al'ona's March 8
 message.

--
Ticket URL: 

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