Re: [gpc-informatics] #711: External Validation for Acute Kidney Injury(AKI) Predictive Models using PCORnet CDM data

[GPC Informatics]

#711: External Validation for Acute Kidney Injury(AKI) Predictive Models using
PCORnet CDM data
--+
 Reporter:  meiliu|   Owner:  xsong
 Type:  task  |  Status:  new
 Priority:  major |   Milestone:
Component:  data-sharing  |  Resolution:
 Keywords:  aki cdm   |  Blocked By:
 Blocking:|
--+

Comment (by xsong):

 Marshfield reported the results after a successful run of the updated
 package on 1-year worth of data (start_date="2017-01-01")

--
Ticket URL: 

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Re: [gpc-informatics] #715: NextD request on mapping payer_type variable

[Al'ona Furmanchuk]

Dear Prof. Campbell,
Yes, drop box is password protected.
No, we did not use your code. KUMC came up with the one that they were
running on their system. They were not able to run your code as is and
adopt it while the idea was preserved.
No single file of yours was posted on dropbox. NU team completely
respects security of our partners. All your files never meant to be seeing
by anyone besides KUMC team. No worries, we all good on whatever I posted.

Have a great day.
Alona.



On Tue, Nov 20, 2018 at 2:29 PM Campbell, James R  wrote:

> Alona
>
> Is the dropbox protected by appropriate security?  I did NOT give
> permission to share the Clarity extracts broadly and they should only be
> provided to other Epic customers who request them.  Please remove them from
> Dropbox and distribute in a secure manner
>
> Jim Campbell
>
>
> --
> *From:* GPC Informatics 
> *Sent:* Tuesday, November 20, 2018 7:27 AM
> *To:* furmanc...@icnanotox.org; nicholas-c-sm...@uiowa.edu;
> dconno...@kumc.edu; mei...@kumc.edu; Campbell, James R; astodd...@mcw.edu;
> michael-wrigh...@uiowa.edu; verhagen.lau...@mcrf.mfldclin.edu;
> xs...@kumc.edu
> *Cc:* GPC-DEV@listserv.kumc.edu; zahra.hossein...@northwestern.edu
> *Subject:* Re: [gpc-informatics] #715: NextD request on mapping
> payer_type variable
>
> Non-UNMC email
>
>
>
>
> #715: NextD request on mapping payer_type variable
> --+---
>  Reporter:  afurmanchuck  |   Owner:  nsmith
>  Type:  problem   |  Status:  assigned
>  Priority:  critical  |   Milestone:  next-d
> Component:  data-stds |  Resolution:
>  Keywords:|  Blocked By:
>  Blocking:  713   |
> --+---
>
> Comment (by afurmanchuck):
>
>  After extensive investigation by KUMC team, Prof. James Campbell & NU team
>  it was decided to '''remove insurance information from ENCOUNTER table'''.
>
>  Insurance information will be extracted for each patient (not each
>  encounter!) form clarity.COVERAGE_MEM_LIST (in Epic). For each patient
>  following elements will be collected:
>
>  '''PATID, Insurance, MEM_EFF_FROM_DATE, MEM_EFF_TO_DATE'''
>
>  Those '''will be added to ENROLLMENT table'''.
>  Please, see all details in new data dictionary in drop box:
>
> https://www.dropbox.com/home/diabetes%20project%20(working%20docs)/Definitions_StudySamples%26Variables?preview=Definitions_Part2-2018-11-20-af.docx
>
>  Updates in corresponding SQL extraction codes will be announced
>  separately.
>
> --
> Ticket URL: <
> http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:27>
> gpc-informatics 
> Greater Plains Network - Informatics
>
> The information in this e-mail may be privileged and confidential,
> intended only for the use of the addressee(s) above. Any unauthorized use
> or disclosure of this information is prohibited. If you have received this
> e-mail by mistake, please delete it and immediately contact the sender.
>
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Re: [gpc-informatics] #715: NextD request on mapping payer_type variable

[Campbell, James R]

Alona

Is the dropbox protected by appropriate security?  I did NOT give permission to 
share the Clarity extracts broadly and they should only be provided to other 
Epic customers who request them.  Please remove them from Dropbox and 
distribute in a secure manner

Jim Campbell



From: GPC Informatics 
Sent: Tuesday, November 20, 2018 7:27 AM
To: furmanc...@icnanotox.org; nicholas-c-sm...@uiowa.edu; dconno...@kumc.edu; 
mei...@kumc.edu; Campbell, James R; astodd...@mcw.edu; 
michael-wrigh...@uiowa.edu; verhagen.lau...@mcrf.mfldclin.edu; xs...@kumc.edu
Cc: GPC-DEV@listserv.kumc.edu; zahra.hossein...@northwestern.edu
Subject: Re: [gpc-informatics] #715: NextD request on mapping payer_type 
variable

Non-UNMC email




#715: NextD request on mapping payer_type variable
--+---
 Reporter:  afurmanchuck  |   Owner:  nsmith
 Type:  problem   |  Status:  assigned
 Priority:  critical  |   Milestone:  next-d
Component:  data-stds |  Resolution:
 Keywords:|  Blocked By:
 Blocking:  713   |
--+---

Comment (by afurmanchuck):

 After extensive investigation by KUMC team, Prof. James Campbell & NU team
 it was decided to '''remove insurance information from ENCOUNTER table'''.

 Insurance information will be extracted for each patient (not each
 encounter!) form clarity.COVERAGE_MEM_LIST (in Epic). For each patient
 following elements will be collected:

 '''PATID, Insurance, MEM_EFF_FROM_DATE, MEM_EFF_TO_DATE'''

 Those '''will be added to ENROLLMENT table'''.
 Please, see all details in new data dictionary in drop box:
 
https://www.dropbox.com/home/diabetes%20project%20(working%20docs)/Definitions_StudySamples%26Variables?preview=Definitions_Part2-2018-11-20-af.docx

 Updates in corresponding SQL extraction codes will be announced
 separately.

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics

The information in this e-mail may be privileged and confidential, intended 
only for the use of the addressee(s) above. Any unauthorized use or disclosure 
of this information is prohibited. If you have received this e-mail by mistake, 
please delete it and immediately contact the sender.
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LOINC CLASS and CLASSTYPE

[Campbell, James R]

Phillip

Assuming that he lab results reported at SW are LOINC coded you can join the 
release table from Regenstrief and use the LOINC.System coded data to map the 
specimen requirement for CDM.  I also used the LOINC.ExampleUCUM units to jump 
start the CDMV4.RESULT_UNIT mapping. The LOINC.CLASSTYPE and CLASS is useful 
for segregating observations for OBS_CLIN (CLASSTYPE = 2 and NOT CLASS LIKE 
'DOC%') and PRO_CM (CLASSTYPE = 4) while laboratory results are CLASSTYPE=1

Jim

The information in this e-mail may be privileged and confidential, intended 
only for the use of the addressee(s) above. Any unauthorized use or disclosure 
of this information is prohibited. If you have received this e-mail by mistake, 
please delete it and immediately contact the sender.
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Re: [gpc-informatics] #717: OBS_CLIN coding for CDMV41

[GPC Informatics]

#717: OBS_CLIN coding for CDMV41
-+
 Reporter:  campbell |   Owner:  dconnolly
 Type:  enhancement  |  Status:  closed
 Priority:  major|   Milestone:  pcornet-cdm-5
Component:  data-stds|  Resolution:  worksforme
 Keywords:  Clinical LOINC OBS_CLIN  |  Blocked By:
 Blocking:   |
-+
Changes (by dconnolly):

 * status:  new => closed
 * resolution:   => worksforme


Comment:

 It's not clear to me what was supposed to happen with this. I suppose it
 happened.

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Re: [gpc-informatics] #715: NextD request on mapping payer_type variable

[GPC Informatics]

#715: NextD request on mapping payer_type variable
--+---
 Reporter:  afurmanchuck  |   Owner:  nsmith
 Type:  problem   |  Status:  assigned
 Priority:  critical  |   Milestone:  next-d
Component:  data-stds |  Resolution:
 Keywords:|  Blocked By:
 Blocking:  713   |
--+---

Comment (by afurmanchuck):

 After extensive investigation by KUMC team, Prof. James Campbell & NU team
 it was decided to '''remove insurance information from ENCOUNTER table'''.

 Insurance information will be extracted for each patient (not each
 encounter!) form clarity.COVERAGE_MEM_LIST (in Epic). For each patient
 following elements will be collected:

 '''PATID, Insurance, MEM_EFF_FROM_DATE, MEM_EFF_TO_DATE'''

 Those '''will be added to ENROLLMENT table'''.
 Please, see all details in new data dictionary in drop box:
 
https://www.dropbox.com/home/diabetes%20project%20(working%20docs)/Definitions_StudySamples%26Variables?preview=Definitions_Part2-2018-11-20-af.docx

 Updates in corresponding SQL extraction codes will be announced
 separately.

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
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