Re: [GRASS-user] i.spec.sam error

[Jaya Krishnan]

Thanks a ton Vero! I installed the standalone version and RStudio works :-)

Cheers

Jaya
​ 

On 15 February 2016 at 12:08, Veronica Andreo  wrote:

> Hi Jaya
>
> and have you tried installing the grass-win standalone installer from here
> [0]? Helmut says both rstudio and R work there. I removed them from my
> mum's windows pc, but I remember I tested and it worked there. Maybe worth
> a try :)
>
> Cheers,
> Vero
>
> [0] https://grass.osgeo.org/download/software/
>
> 2016-02-15 16:59 GMT-03:00 Jaya Krishnan :
>
>> Hi Vero,
>>
>> Yes, I've installed the same versions from OSGeo4w, pretty recently.
>> Neither R nor RStudio works in my case.
>>
>> Thanks,
>>
>> Jaya
>> ​ 
>>
>> On 15 February 2016 at 06:05, Veronica Andreo 
>> wrote:
>>
>>> Hello Jaya
>>>
>>> [cc Helmut]
>>>
>>> In grass 7.0.3 and grass 7.1 installed from OSGeo4w (updated just now),
>>> if in comand line i write rstudio only... no path, no extension, it works
>>> as expected... but not if I write only R... i remember both options worked
>>> before (
>>> http://osgeo-org.1560.x6.nabble.com/R-and-RStudio-in-winGRASS-testing-welcome-td5235108.html#a5236435).
>>> Maybe some further changes altered that.
>>>
>>> Cheers,
>>> Vero
>>>
>>> 2016-02-14 18:14 GMT-03:00 Jaya Krishnan :
>>>
 Thanks Sajid, but that didn't work either.

 Best,

 Jaya


 On 14 February 2016 at 02:56, Sajid Pareeth  wrote:

> Hi Jaya
>
>>
>> Sorry to bother you again. But I was thinking of using Spectral Angle
>> Mapper in RStudio's RSToolbox package as an alternative. So I followed 
>> the
>> steps at the link
>> https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
>> but am unable to run RStudio at the GRASS command prompt. The error is
>> again * 'rstudio' is not recognized as an internal or external
>> command,operable program or batch file *(attaching error below).
>>
>
> Please try by entering entire path in the GRASS session instead of
> "rstudio.exe".
>
>> C:\Program Files\RStudio\bin\rstudio.exe
>>
>
>
> Regards
>
> --
> Sajid Pareeth
> https://it.linkedin.com/in/spareeth
>
>

 ___
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 grass-user@lists.osgeo.org
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>>>
>>>
>>
>
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Re: [GRASS-user] i.spec.sam error

[Helmut Kudrnovsky]

>Yes, I've installed the same versions from OSGeo4w, pretty recently. Neither
R nor RStudio works in my >case.

please post here your R and rstudio installation path.

tested here with 

System Info 
GRASS version: 7.0.3
GRASS SVN Revision: 67691   
Build Date: 2016-01-28  
Build Platform: x86_64-w64-mingw32  
GDAL/OGR: 1.11.3
PROJ.4: 4.9.2   
GEOS: 3.5.0 
SQLite: 3.7.17  
Python: 2.7.5   
wxPython: 2.8.12.1  
Platform: Windows-7-6.1.7601-SP1 (OSGeo4W)

and it works.

  __  ___   _____
 / / __ \/   | / ___/ ___/   / /  _/ ___/
/ / __/ /_/ / /| | \__ \\_  \   / / __ / / \__ \
   / /_/ / _, _/ ___ |___/ /__/ /  / /_/ // / ___/ /
   \/_/ |_/_/  |_///   \/___///

Welcome to GRASS GIS 7.0.3
GRASS GIS homepage:  http://grass.osgeo.org
This version running through:Command Shell
(C:\windows\system32\cmd.
exe)
Help is available with the command:  g.manual -i
See the licence terms with:  g.version -c
If required, restart the GUI with:   g.gui wxpython
When ready to quit enter:exit

Launching  GUI in the background, please wait...
Microsoft Windows [Version 6.1.7601]
Copyright (c) 2009 Microsoft Corporation. Alle Rechte vorbehalten.

C:\>R

R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> q()
Save workspace image? [y/n/c]: n

C:\>



-
best regards
Helmut
--
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Re: [GRASS-user] i.spec.sam error

[Veronica Andreo]

Hi Jaya

and have you tried installing the grass-win standalone installer from here
[0]? Helmut says both rstudio and R work there. I removed them from my
mum's windows pc, but I remember I tested and it worked there. Maybe worth
a try :)

Cheers,
Vero

[0] https://grass.osgeo.org/download/software/

2016-02-15 16:59 GMT-03:00 Jaya Krishnan :

> Hi Vero,
>
> Yes, I've installed the same versions from OSGeo4w, pretty recently.
> Neither R nor RStudio works in my case.
>
> Thanks,
>
> Jaya
> ​ 
>
> On 15 February 2016 at 06:05, Veronica Andreo 
> wrote:
>
>> Hello Jaya
>>
>> [cc Helmut]
>>
>> In grass 7.0.3 and grass 7.1 installed from OSGeo4w (updated just now),
>> if in comand line i write rstudio only... no path, no extension, it works
>> as expected... but not if I write only R... i remember both options worked
>> before (
>> http://osgeo-org.1560.x6.nabble.com/R-and-RStudio-in-winGRASS-testing-welcome-td5235108.html#a5236435).
>> Maybe some further changes altered that.
>>
>> Cheers,
>> Vero
>>
>> 2016-02-14 18:14 GMT-03:00 Jaya Krishnan :
>>
>>> Thanks Sajid, but that didn't work either.
>>>
>>> Best,
>>>
>>> Jaya
>>>
>>>
>>> On 14 February 2016 at 02:56, Sajid Pareeth  wrote:
>>>
 Hi Jaya

>
> Sorry to bother you again. But I was thinking of using Spectral Angle
> Mapper in RStudio's RSToolbox package as an alternative. So I followed the
> steps at the link
> https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
> but am unable to run RStudio at the GRASS command prompt. The error is
> again * 'rstudio' is not recognized as an internal or external
> command,operable program or batch file *(attaching error below).
>

 Please try by entering entire path in the GRASS session instead of
 "rstudio.exe".

> C:\Program Files\RStudio\bin\rstudio.exe
>


 Regards

 --
 Sajid Pareeth
 https://it.linkedin.com/in/spareeth


>>>
>>> ___
>>> grass-user mailing list
>>> grass-user@lists.osgeo.org
>>> http://lists.osgeo.org/mailman/listinfo/grass-user
>>>
>>
>>
>
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Re: [GRASS-user] i.spec.sam error

[Jaya Krishnan]

Hi Vero,

Yes, I've installed the same versions from OSGeo4w, pretty recently.
Neither R nor RStudio works in my case.

Thanks,

Jaya
​ 

On 15 February 2016 at 06:05, Veronica Andreo  wrote:

> Hello Jaya
>
> [cc Helmut]
>
> In grass 7.0.3 and grass 7.1 installed from OSGeo4w (updated just now), if
> in comand line i write rstudio only... no path, no extension, it works as
> expected... but not if I write only R... i remember both options worked
> before (
> http://osgeo-org.1560.x6.nabble.com/R-and-RStudio-in-winGRASS-testing-welcome-td5235108.html#a5236435).
> Maybe some further changes altered that.
>
> Cheers,
> Vero
>
> 2016-02-14 18:14 GMT-03:00 Jaya Krishnan :
>
>> Thanks Sajid, but that didn't work either.
>>
>> Best,
>>
>> Jaya
>>
>>
>> On 14 February 2016 at 02:56, Sajid Pareeth  wrote:
>>
>>> Hi Jaya
>>>

 Sorry to bother you again. But I was thinking of using Spectral Angle
 Mapper in RStudio's RSToolbox package as an alternative. So I followed the
 steps at the link
 https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
 but am unable to run RStudio at the GRASS command prompt. The error is
 again * 'rstudio' is not recognized as an internal or external
 command,operable program or batch file *(attaching error below).

>>>
>>> Please try by entering entire path in the GRASS session instead of
>>> "rstudio.exe".
>>>
 C:\Program Files\RStudio\bin\rstudio.exe

>>>
>>>
>>> Regards
>>>
>>> --
>>> Sajid Pareeth
>>> https://it.linkedin.com/in/spareeth
>>>
>>>
>>
>> ___
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>> grass-user@lists.osgeo.org
>> http://lists.osgeo.org/mailman/listinfo/grass-user
>>
>
>
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Re: [GRASS-user] i.spec.sam error

[Helmut Kudrnovsky]

Veronica Andreo wrote
> Hello Jaya
> 
> [cc Helmut]
> 
> In grass 7.0.3 and grass 7.1 installed from OSGeo4w (updated just now), if
> in comand line i write rstudio only... no path, no extension, it works as
> expected... but not if I write only R... i remember both options worked
> before (
> http://osgeo-org.1560.x6.nabble.com/R-and-RStudio-in-winGRASS-testing-welcome-td5235108.html#a5236435).
> Maybe some further changes altered that.
> 
> Cheers,
> Vero
> 
> 2016-02-14 18:14 GMT-03:00 Jaya Krishnan 

> jayaakrish@

> :
> 
>> Thanks Sajid, but that didn't work either.
>>
>> Best,
>>
>> Jaya
>>
>>
>> On 14 February 2016 at 02:56, Sajid Pareeth 

> spareeth@

>  wrote:
>>
>>> Hi Jaya
>>>

 Sorry to bother you again. But I was thinking of using Spectral Angle
 Mapper in RStudio's RSToolbox package as an alternative. So I followed
 the
 steps at the link
 https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
 but am unable to run RStudio at the GRASS command prompt. The error is
 again * 'rstudio' is not recognized as an internal or external
 command,operable program or batch file *(attaching error below).

>>>
>>> Please try by entering entire path in the GRASS session instead of
>>> "rstudio.exe".
>>>
 C:\Program Files\RStudio\bin\rstudio.exe

>>>
>>>
>>> Regards
>>>
>>> --
>>> Sajid Pareeth
>>> https://it.linkedin.com/in/spareeth
>>>
>>>
>>
>> ___
>> grass-user mailing list
>> 

> grass-user@.osgeo

>> http://lists.osgeo.org/mailman/listinfo/grass-user
>>
> 
> ___
> grass-user mailing list

> grass-user@.osgeo

> http://lists.osgeo.org/mailman/listinfo/grass-user

Please see https://trac.osgeo.org/osgeo4w/ticket/413

Unfortunately I haven't found time yet to implement the simple R-winGrass
coupling into Osgeo4w which is already working in standalone winGRASS. 

As Veronica mentioned, rstudio should work in the newest Osgeo4w and
standalone winGRASS ; R and rstudio should work only in standalone winGRASS. 

I hope to find time in the next weeks. 



-
best regards
Helmut
--
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Re: [GRASS-user] i.spec.sam error

[Veronica Andreo]

Hello Jaya

[cc Helmut]

In grass 7.0.3 and grass 7.1 installed from OSGeo4w (updated just now), if
in comand line i write rstudio only... no path, no extension, it works as
expected... but not if I write only R... i remember both options worked
before (
http://osgeo-org.1560.x6.nabble.com/R-and-RStudio-in-winGRASS-testing-welcome-td5235108.html#a5236435).
Maybe some further changes altered that.

Cheers,
Vero

2016-02-14 18:14 GMT-03:00 Jaya Krishnan :

> Thanks Sajid, but that didn't work either.
>
> Best,
>
> Jaya
>
>
> On 14 February 2016 at 02:56, Sajid Pareeth  wrote:
>
>> Hi Jaya
>>
>>>
>>> Sorry to bother you again. But I was thinking of using Spectral Angle
>>> Mapper in RStudio's RSToolbox package as an alternative. So I followed the
>>> steps at the link
>>> https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
>>> but am unable to run RStudio at the GRASS command prompt. The error is
>>> again * 'rstudio' is not recognized as an internal or external
>>> command,operable program or batch file *(attaching error below).
>>>
>>
>> Please try by entering entire path in the GRASS session instead of
>> "rstudio.exe".
>>
>>> C:\Program Files\RStudio\bin\rstudio.exe
>>>
>>
>>
>> Regards
>>
>> --
>> Sajid Pareeth
>> https://it.linkedin.com/in/spareeth
>>
>>
>
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Re: [GRASS-user] i.spec.sam error

[Jaya Krishnan]

Thanks Sajid, but that didn't work either.

Best,

Jaya


On 14 February 2016 at 02:56, Sajid Pareeth  wrote:

> Hi Jaya
>
>>
>> Sorry to bother you again. But I was thinking of using Spectral Angle
>> Mapper in RStudio's RSToolbox package as an alternative. So I followed the
>> steps at the link
>> https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
>> but am unable to run RStudio at the GRASS command prompt. The error is
>> again * 'rstudio' is not recognized as an internal or external
>> command,operable program or batch file *(attaching error below).
>>
>
> Please try by entering entire path in the GRASS session instead of
> "rstudio.exe".
>
>> C:\Program Files\RStudio\bin\rstudio.exe
>>
>
>
> Regards
>
> --
> Sajid Pareeth
> https://it.linkedin.com/in/spareeth
>
>
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Re: [GRASS-user] i.spec.sam error

[Sajid Pareeth]

Hi Jaya

>
> Sorry to bother you again. But I was thinking of using Spectral Angle
> Mapper in RStudio's RSToolbox package as an alternative. So I followed the
> steps at the link
> https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
> but am unable to run RStudio at the GRASS command prompt. The error is
> again * 'rstudio' is not recognized as an internal or external
> command,operable program or batch file *(attaching error below).
>

Please try by entering entire path in the GRASS session instead of
"rstudio.exe".

> C:\Program Files\RStudio\bin\rstudio.exe
>


Regards

-- 
Sajid Pareeth
https://it.linkedin.com/in/spareeth
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Re: [GRASS-user] i.spec.sam error

[Markus Neteler]

On Sat, Feb 13, 2016 at 3:14 AM, Jaya Krishnan  wrote:
> Hi,
>
> I am trying to use the addon i.spec.sam on GRASS 7.0.3, but am getting an
> error "'i.spec.sam' is not recognized as an internal or external
> command". Any help is appreciated.

Hi,

please tell us your operating system.

Best
Markus
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Re: [GRASS-user] i.spec.sam error

[Moritz Lennert]

On 13/02/16 03:14, Jaya Krishnan wrote:

Hi,

I am trying to use the addon i.spec.sam on GRASS 7.0.3, but am getting
an error "'i.spec.sam' is not recognized as an internal or external
command". Any help is appreciated.


i.spec.sam is an addon, so you have to install it first with:

g.extension i.spec.sam

Moritz
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Re: [GRASS-user] i.spec.sam error

[Markus Neteler]

Hi Jaya,

On Sat, Feb 13, 2016 at 8:34 PM, Jaya Krishnan  wrote:
> Hi Markus and Moritz,
>
> Thanks for replying.
> I am working on Windows 7 and using GRASS 7.0.3 on OSGeo4W. I installed
> i.spec.sam using g.extension, and tried to run it from the command console,
> but get the error 'i.spec.sam' is not recognized as an internal or external
> command,operable program or batch file.

Yes, in this case you are not (yet) in luck:

How to check  that:
https://grass.osgeo.org/grass70/manuals/addons/
--> Windows log files
--> imagery/i.spec.unmix FAILED

Looking at the log file there, you will see
 main.c:31:2: error: #error GRASS is not configured with BLAS
 main.c:35:2: error: #error GRASS is not configured with LAPACK

That means, that the BLAS and LAPACK libraries are not present on the
Windows addons build server.

I found some here: https://icl.cs.utk.edu/lapack-for-windows/ but our
WinGRASS maintainer would need to install that (i.e. find the time and
have success with these libs).
Coming soon, I hope.

By chance we'll meet next week in Italy, I have taken liberty to add
it to the agenda:
https://grasswiki.osgeo.org/wiki/GRASS_GIS_contributors_meetings_in_San_Michele/February_2016

Best
Markus
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Re: [GRASS-user] i.spec.sam error

[Jaya Krishnan]

Hi Markus,

Thanks very much for the quick response.

Guess I'll wait till the libraries are installed by the WinGRASS
maintainer. I suppose the reason I can't use i.spectral is the same,
although it is not an addon.

Would have loved to attend the meet in Italy, but I don't see a chance, as
I live in Canada. Thank you for adding it to the agenda though.

Best,

Jaya
​LinkedIn: ​
https://ca.linkedin.com/in/jayaakrish

On 13 February 2016 at 12:51, Markus Neteler  wrote:

> Hi Jaya,
>
> On Sat, Feb 13, 2016 at 8:34 PM, Jaya Krishnan 
> wrote:
> > Hi Markus and Moritz,
> >
> > Thanks for replying.
> > I am working on Windows 7 and using GRASS 7.0.3 on OSGeo4W. I installed
> > i.spec.sam using g.extension, and tried to run it from the command
> console,
> > but get the error 'i.spec.sam' is not recognized as an internal or
> external
> > command,operable program or batch file.
>
> Yes, in this case you are not (yet) in luck:
>
> How to check  that:
> https://grass.osgeo.org/grass70/manuals/addons/
> --> Windows log files
> --> imagery/i.spec.unmix FAILED
>
> Looking at the log file there, you will see
>  main.c:31:2: error: #error GRASS is not configured with BLAS
>  main.c:35:2: error: #error GRASS is not configured with LAPACK
>
> That means, that the BLAS and LAPACK libraries are not present on the
> Windows addons build server.
>
> I found some here: https://icl.cs.utk.edu/lapack-for-windows/ but our
> WinGRASS maintainer would need to install that (i.e. find the time and
> have success with these libs).
> Coming soon, I hope.
>
> By chance we'll meet next week in Italy, I have taken liberty to add
> it to the agenda:
>
> https://grasswiki.osgeo.org/wiki/GRASS_GIS_contributors_meetings_in_San_Michele/February_2016
>
> Best
> Markus
>
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Re: [GRASS-user] i.spec.sam error

[Jaya Krishnan]

HI again Markus,

Sorry to bother you again. But I was thinking of using Spectral Angle
Mapper in RStudio's RSToolbox package as an alternative. So I followed the
steps at the link
https://grasswiki.osgeo.org/wiki/R_statistics/rgrass7#Using_RStudio_in_a_GRASS_GIS_session
but am unable to run RStudio at the GRASS command prompt. The error is
again * 'rstudio' is not recognized as an internal or external
command,operable program or batch file *(attaching error below).
I changed the path in env.bat file in the GRASS folder to include RStudio
and R, but no luck.

Might there be a solution?

Thanks,

Jaya

[image: Inline images 1]



On 13 February 2016 at 13:07, Jaya Krishnan  wrote:

> Hi Markus,
>
> Thanks very much for the quick response.
>
> Guess I'll wait till the libraries are installed by the WinGRASS
> maintainer. I suppose the reason I can't use i.spectral is the same,
> although it is not an addon.
>
> Would have loved to attend the meet in Italy, but I don't see a chance, as
> I live in Canada. Thank you for adding it to the agenda though.
>
> Best,
>
> Jaya
> ​LinkedIn: ​
> https://ca.linkedin.com/in/jayaakrish
>
> On 13 February 2016 at 12:51, Markus Neteler  wrote:
>
>> Hi Jaya,
>>
>> On Sat, Feb 13, 2016 at 8:34 PM, Jaya Krishnan 
>> wrote:
>> > Hi Markus and Moritz,
>> >
>> > Thanks for replying.
>> > I am working on Windows 7 and using GRASS 7.0.3 on OSGeo4W. I installed
>> > i.spec.sam using g.extension, and tried to run it from the command
>> console,
>> > but get the error 'i.spec.sam' is not recognized as an internal or
>> external
>> > command,operable program or batch file.
>>
>> Yes, in this case you are not (yet) in luck:
>>
>> How to check  that:
>> https://grass.osgeo.org/grass70/manuals/addons/
>> --> Windows log files
>> --> imagery/i.spec.unmix FAILED
>>
>> Looking at the log file there, you will see
>>  main.c:31:2: error: #error GRASS is not configured with BLAS
>>  main.c:35:2: error: #error GRASS is not configured with LAPACK
>>
>> That means, that the BLAS and LAPACK libraries are not present on the
>> Windows addons build server.
>>
>> I found some here: https://icl.cs.utk.edu/lapack-for-windows/ but our
>> WinGRASS maintainer would need to install that (i.e. find the time and
>> have success with these libs).
>> Coming soon, I hope.
>>
>> By chance we'll meet next week in Italy, I have taken liberty to add
>> it to the agenda:
>>
>> https://grasswiki.osgeo.org/wiki/GRASS_GIS_contributors_meetings_in_San_Michele/February_2016
>>
>> Best
>> Markus
>>
>
>
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