Dear all, I want to calculate the number of inter-peptide and intra-peptide side-chain–side-chain contacts and the criteria to form a contact is that: the distance between the centers of mass of two residues is less than a specified distance. I tried gmx mindist and gmx distance command lines but i got wrong results.
Please suggest me right command line to do this analysis. Thank you! Sundari -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
