On 1/25/18 10:54 AM, ZHANG Cheng wrote:
Dear Gromacs,
Can I ask if there is an alternative to do_dssp for secondary structure
analysis?
I am waiting for our IT staff to install the DSSP on our cluster. But there was
some errors.
https://github.com/UCL-RITS/rcps-buildscripts/issues/137
Normally, users can install anything they like in their home
directories. Then just set the DSSP environment variable to point to the
binary.
While still waiting for that, can I ask if Gromacs has other tools (e.g.
STRIDE) for secondary structure analysis?
It does not.
-Justin
--
==
Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry
303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061
jalem...@vt.edu | (540) 231-3129
http://www.biochem.vt.edu/people/faculty/JustinLemkul.html
==
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