My only guess is that your compiler and/or MPICH version are broken. We
certainly don't test on it. There's many reasons the install guide for 4.6
says to get the latest version of your compiler of choice.
Mark
On Thu, Feb 20, 2014 at 12:35 PM, Pavan Kumar kumar.pavan...@gmail.comwrote:
-- Forwarded message --
From: Pavan Kumar kumar.pavan...@gmail.com
Date: Thu, Feb 20, 2014 at 3:34 PM
Subject: Segmentation fault with mdrun
To: gromacs.org_gmx-users-requ...@maillist.sys.kth.se
Hello,
I am using gromacs 4.6.5.
I am running my code on the cluster providing 8 nodes and 4 processor each.
I am getting Segmentation Fault while running mdrunmpi
My command
*mpirun -n 8 mdrunmpi.4.6.5 -v -deffnm em*
More Details:
*Machine : GNU/Linux x86_64*
*gcc (GCC) 4.3.3 *
*cmake version 2.8.3*
Compilation Details:
*I have compiled my code using mpich compiler *
*cmake .. -DGMX_GPU=OFF -DGMX_MPI=ON
-DCMAKE_C_COMPILER=/opt/mpich2/gnu/bin/mpicc -DGMX_BUILD_OWN_FFTW=ON
-DGMX_CPU_ACCELERATION=SSE2
-DCMAKE_INSTALL_PREFIX=/home/garuda/garuda3/gromacs465*
If there is any problem in compiling the code itself, what is the error and
how it could be corrected.
Please give me any solutions, why i am getting the above error.
--
Thanks Regards,
Pavan Kumar
Project Engineer
CDAC -KP
Ph +91-7676367646
--
Thanks Regards,
Pavan Kumar
Project Engineer
CDAC -KP
Ph +91-7676367646
--
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