Hi, I am working on MD studies of Protein-DNA complex.I get trajectories from gromacs version 5.1 . Now I want to form dynamic cross correlation map from these trajectories.Please let me know which software can read .trr file and I can use to plot Dynamic cross correlation map.I have read VMD tutorial on Dynamical Network Analysis .Here psf and dcd files have been used to create the network.My question is :Is it possible to do Dynamical Network Analysis using VMD through GROMACS trajectories?With Regards,Soumi Das -- Gromacs Users mailing list
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