Dear all, I have a protein trajectory in xtc format. I want to do the MSM analysis on this trajectory to see how the process is going on and the meta-stable states. I have followed the Video series by Frank Noe and team on MSM, but it is not clear to me how to start it. I have some questions, 1) What are the python packages that I need to install? 2) How should I start it? 3) What kind of data they have generated? Any one with the introductory steps of MSM analysis, any link or hand-on tutorial video is highly appreciated. - Soham -- Gromacs Users mailing list
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