Re: [gmx-users] backbone contact analysis of martini cg protein
Some respect for this user board would be nice. If there is anything unclear about how gmx make_ndx works, please ask a specific question instead of posting the same very unclear thing over and over. Noone will be able to help with your question, because it requires precise knowledge of your system and what must be included in the index to calculate what you need. You're basically asking others to do your job for you. Alex On 5/29/2018 11:49 PM, SHAHEE ISLAM wrote: can anyone please give me some idea. On 5/30/18, SHAHEE ISLAM wrote: hi, i want to calculate the contact between the backbone of protein(it is a coarse grained protein using martini force field).how i will make .ndx file to calculate the contact. thanking you shahee islam university of calcutta -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
Re: [gmx-users] backbone contact analysis of martini cg protein
can anyone please give me some idea. On 5/30/18, SHAHEE ISLAM wrote: > hi, > i want to calculate the contact between the backbone of protein(it is > a coarse grained protein using martini force field).how i will make > .ndx file to calculate the contact. > > thanking you > shahee islam > university of calcutta > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
[gmx-users] backbone contact analysis of martini cg protein
hi, i want to calculate the contact between the backbone of protein(it is a coarse grained protein using martini force field).how i will make .ndx file to calculate the contact. thanking you shahee islam university of calcutta -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
