[gmx-users] distance tracking

2014-09-17 Thread h . alizadeh
Dear GROMACS users,
Is it possible to track H-bonding or distance between two certain atoms in
GROMACS?
Best wishes, 
Hadi

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Re: [gmx-users] distance tracking

2014-09-17 Thread Justin Lemkul



On 9/17/14 7:01 AM, h.aliza...@znu.ac.ir wrote:

Dear GROMACS users,
Is it possible to track H-bonding or distance between two certain atoms in
GROMACS?


Of course.  See Chapter 8 for available analysis tools.  There are several 
designed to do exactly what you want.


-Justin

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==

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
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jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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