Re: [PATCH 1/3] gnu: Add r-chipseq.

2017-01-06 Thread Ludovic Courtès
All 3 packages look all right to me.

Thanks!

Ludo’.



[PATCH 1/3] gnu: Add r-chipseq.

2017-01-04 Thread Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
---
 gnu/packages/bioinformatics.scm | 27 ++-
 1 file changed, 26 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6b363afe0..9c01c2436 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016 Ricardo Wurmus 
+;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus 
 ;;; Copyright © 2015, 2016 Ben Woodcroft 
 ;;; Copyright © 2015, 2016 Pjotr Prins 
 ;;; Copyright © 2015 Andreas Enge 
@@ -7869,3 +7869,28 @@ replacement for strverscmp.")
 samples into a single report.  It contains modules for a large number of
 common bioinformatics tools.")
 (license license:gpl3)))
+
+(define-public r-chipseq
+  (package
+(name "r-chipseq")
+(version "1.24.0")
+(source
+ (origin
+   (method url-fetch)
+   (uri (bioconductor-uri "chipseq" version))
+   (sha256
+(base32
+ "115ayp82rs99iaswrx45skw1i5iacgwzz5k8rzijbp5qic0554n0"
+(build-system r-build-system)
+(propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+   ("r-genomicranges" ,r-genomicranges)
+   ("r-iranges" ,r-iranges)
+   ("r-s4vectors" ,r-s4vectors)
+   ("r-shortread" ,r-shortread)))
+(home-page "http://bioconductor.org/packages/chipseq";)
+(synopsis "Package for analyzing ChIPseq data")
+(description
+ "This package provides tools for processing short read data from ChIPseq
+experiments.")
+(license license:artistic2.0)))
-- 
2.11.0