Thank you both - I've manage to run it to the end following your advice
Best wishes
From: Glasser, Matthew [glass...@wustl.edu]
Sent: 03 November 2017 00:21
To: Mara Cercignani; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] problem with
FreeSurfer2CaretConvertAndRegisterNonlinear
If you search the list you will see a response to this. We hope to get out a
new official version of Connectome Workbench soon so that folks won’t run into
this, but you can either install a development version or comment out that line
for now/
Peace,
Matt.
From:
<hcp-users-boun...@humanconnectome.org<redir.aspx?REF=8kbw_dnfLwGe6tP-QW0e9rXZYhFp5QWmNOcesz-Qyizso4vpiSLVCAFtYWlsdG86aGNwLXVzZXJzLWJvdW5jZXNAaHVtYW5jb25uZWN0b21lLm9yZw..>>
on behalf of Mara Cercignani
<m.cercign...@bsms.ac.uk<redir.aspx?REF=p97adrGrQKK30u2l7HMP9Ujut1hskxqt0oZBa75rffvso4vpiSLVCAFtYWlsdG86TS5DZXJjaWduYW5pQGJzbXMuYWMudWs.>>
Date: Thursday, November 2, 2017 at 4:45 AM
To:
"hcp-users@humanconnectome.org<redir.aspx?REF=jshk1TenYW2_OFAVmgA3FXeBzh8uJv8IcYz6zQ7QED7so4vpiSLVCAFtYWlsdG86aGNwLXVzZXJzQGh1bWFuY29ubmVjdG9tZS5vcmc.>"
<hcp-users@humanconnectome.org<redir.aspx?REF=jshk1TenYW2_OFAVmgA3FXeBzh8uJv8IcYz6zQ7QED7so4vpiSLVCAFtYWlsdG86aGNwLXVzZXJzQGh1bWFuY29ubmVjdG9tZS5vcmc.>>
Subject: [HCP-Users] problem with FreeSurfer2CaretConvertAndRegisterNonlinear
Dear HCP-users list
I am new to the HCP pipeline and I'm experiencing a problem while running
PostFreeSurferPipelineBatch.s on Mac-Os.
I get the following error message:
While running:
/Applications/workbench/bin_macosx64/../macosx64_apps/wb_command.app/Contents/MacOS/wb_command
-surface-distortion
/Users/MC/subjects/Subject1/MNINonLinear/Native/Subject1.L.sphere.native.surf.gii
/Users/MC/subjects/Subject1/MNINonLinear/Native/Subject1.L.sphere.reg.reg_LR.native.surf.gii
/Users/MC/subjects/Subject1/MNINonLinear/Native/Subject1.L.Strain_FS.native.shape.gii
-local-affine-method
ERROR: Unexpected parameter: -local-affine-method
Can anybody help?
Thanks and best wishes
Mara
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