News from the Human Connectome Project (HCP) June 5, 2018 Connectome Workbench v1.3.1 Released Announcing version 1.3.1 of Connectome Workbench<https://www.humanconnectome.org/software/get-connectome-workbench> (WB) brain visualization and analysis software, which fixes a few bugs and adds a few features from the recent v1.3.0 release, is now available for 64-bit Mac OSX, Windows, and Linux. The Workbench distribution includes wb_view, a GUI-based visualization platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data. Changes in Workbench v1.3.1 wb_view: New Features
* Scene numbers using a file added next to files in scene "list files" window * Scenes "replace all" no longer shows tab highlight outline in captured previews * Builds with older QT5 no longer have very large overlay toolbox by default Bug Fixes * fixed wb_view crash when loading label volumes * Settings synchronized across overlay settings windows that refer to the same file wb_command: New Features * -*-roi-from-extrema commands give warnings when output has no maps * -volume-set-space now has a -file option to take space information from another volume * -volume-math copies timestep from input files Bug Fixes * bash completion for wb_shortcuts should now work reliably * wb_shortcuts -cifti-demean should not give warnings about extensions for temporary files Installation for improved tab completion for wb_command: The below instructions are OPTIONAL, they are not required for workbench to function properly. They are intended for users that use wb_command manually in the bash shell. These instructions are only for people who downloaded workbench as a zip file, installation through a package manager such as neurodebian performs similar steps automatically. For relatively modern versions of the "bash" shell, workbench now provides tab completions for wb_command options and file extensions (the default OS X bash is too old, you would need to use homebrew, macports, or similar). The easiest way to install them is to copy the file "bashcomplete_wb_command" from the workbench folder into /etc/bash_completion.d/, if you have admin rights. If you do not have admin rights, you can make a copy of "bashcomplete_wb_command" in your home directory, but renamed to ".bash_completion" (the dot on the front is important). Ignore the "bashcomplete_wb_shortcuts" file, the wb_shortcuts completions are also inside the "bashcomplete_wb_command" file. The file is located here, depending on OS: Ubuntu/Debian Linux: workbench/exe_linux64/bashcomplete_wb_command Centos/RedHat Linux: workbench/exe_rh_linux64/bashcomplete_wb_command Windows: workbench/bin_windows64/bashcomplete_wb_command OS X: workbench/macosx64_apps/bashcomplete_wb_command Once this is done, open a NEW terminal window, type "wb_command -file-info" but don't press enter, instead press tab, and the line should change to "wb_command -file-information". If it does not, then it is likely that the OS's "bash-completion" package is not installed. WB v1.3.1 is compatible with the WB v1.0 tutorial and the processed 1200 Subjects Group Average Data available to download at http://humanconnectome.org/connectome/get-connectome-workbench.html and on the <https://db.humanconnectome.org/data/projects/HCP_900> ConnectomeDB HCP project page<https://db.humanconnectome.org/data/projects/HCP_1200>. Access to both datasets require ConnectomeDB login and signature of the HCP Open Access Data Use Terms. To download the <https://github.com/Washington-University/workbench> WB v1.3.1 source code from GitHub<https://github.com/Washington-University/workbench>: follow the link, click Releases (near the top center of the page), then under v1.3.1, click the “Source code (zip)” or “Source code (tar.gz)” button. Discussion of Connectome Workbench usage, bugs, and features can be posted to the hcp-users discussion list (sign up here<https://www.humanconnectome.org/contact-us>). <http://www.ncbi.nlm.nih.gov/pubmed/27074495> Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> e...@wustl.edu<mailto:e...@wustl.edu> www.humanconnectome.org<http://www.humanconnectome.org/> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
