Re: Seeking suggestions for fixing the R gpg package
Thanks so much, that worked! It was not at all clear to me that such a dependency existed or that if it did it would not already be encapsulated by GPGME itself. On May 6, 2022 4:56:00 AM EDT, zimoun wrote: >Hi, > >On Thu, 05 May 2022 at 13:37, Kyle Andrews wrote: > >> (propagated-inputs (list r-askpass r-curl)) >> (native-inputs (list pkg-config r-knitr gpgme)) > >[...] > >> 8<- >> Error: package or namespace load failed for ‘gpg’: > >I have looked at all the details, but ’gpg’ seems required, no? > >Maybe try to add it as native-inputs. > > >Cheers, >simon
Re: Seeking suggestions for fixing the R gpg package
Hi, On Thu, 05 May 2022 at 13:37, Kyle Andrews wrote: > (propagated-inputs (list r-askpass r-curl)) > (native-inputs (list pkg-config r-knitr gpgme)) [...] > 8<- > Error: package or namespace load failed for ‘gpg’: I have looked at all the details, but ’gpg’ seems required, no? Maybe try to add it as native-inputs. Cheers, simon
Seeking suggestions for fixing the R gpg package
Hi, I want to use the R package gpg which provides bindings to GPGME from within Guix. Most of the time packaging R things is really easy thanks to the handy `guix import cran' command. Unfortunately, something is breaking with GPGME which is making this not work as I expected. Unfortunately, I don't really have any experience with dealing with this problem. Can anyone suggest how they would go about debugging this? I opened a bug report on the R gpg, but I don't really know if that's the appropriate place. There I included the Guix build error report. The key problem seems to be that > error: GPGME setting OpenPGP path/home error: Invalid crypto engine https://github.com/jeroen/gpg/issues/14 My non-working package code is below: 8<- (use-modules (guix packages) (guix download) (guix build-system r) (guix git-download) ((guix licenses) #:prefix license:) (gnu packages pkg-config) (gnu packages compression) (gnu packages gnupg) (gnu packages maths) (gnu packages cran) (gnu packages statistics) (gnu packages gcc)) (define-public r-gpg (package (name "r-gpg") (version "1.2.6") (source (origin (method url-fetch) (uri (cran-uri "gpg" version)) (sha256 (base32 "17rvi3qff2kanqr3g20dzhn48bfh5sv57g0wsamndzcif7rhjhby" (properties `((upstream-name . "gpg"))) (build-system r-build-system) (propagated-inputs (list r-askpass r-curl)) (native-inputs (list pkg-config r-knitr gpgme)) (home-page "https://github.com/jeroen/gpg;) (synopsis "GNU Privacy Guard for R") (description "Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods. Includes utilities for public key encryption, creating and verifying digital signatures, and managing your local keyring. Some functionality depends on the version of GnuPG that is installed on the system. On Windows this package can be used together with 'GPG4Win' which provides a GUI for managing keys and entering passphrases.") (license license:expat))) ->8 The build of the R package seemed to go fine. It only fails when it tries to test that the package can be loaded into an R session. 8<- Using PKG_CFLAGS=-I/gnu/store/33x095pip87pxcn23cz8k96jq6bka51s-gpgme-1.15.1/include -I/gnu/store/imh6q627pj1jpcxdzjpvdwmlwh8kl5kw-libassuan-2.5.5/include -I/gnu/store/pilv2s68v4xamxwk1ahfy7q32j6wnf7l-libgpg-error-1.42/include Using PKG_LIBS=-L/gnu/store/33x095pip87pxcn23cz8k96jq6bka51s-gpgme-1.15.1/lib -lgpgme -L/gnu/store/imh6q627pj1jpcxdzjpvdwmlwh8kl5kw-libassuan-2.5.5/lib -lassuan -L/gnu/store/pilv2s68v4xamxwk1ahfy7q32j6wnf7l-libgpg-error-1.42/lib -lgpg-error ** libs gcc -I"/gnu/store/fm6grlr7rvb176ls6kkamadim64w3jli-r-minimal-4.1.3/lib/R/include" -DNDEBUG -I/gnu/store/33x095pip87pxcn23cz8k96jq6bka51s-gpgme-1.15.1/include -I/gnu/store/imh6q627pj1jpcxdzjpvdwmlwh8kl5kw-libassuan-2.5.5/include -I/gnu/store/pilv2s68v4xamxwk1ahfy7q32j6wnf7l-libgpg-error-1.42/include -I/usr/local/include -fpic -g -O2 -c encrypt.c -o encrypt.o gcc -I"/gnu/store/fm6grlr7rvb176ls6kkamadim64w3jli-r-minimal-4.1.3/lib/R/include" -DNDEBUG -I/gnu/store/33x095pip87pxcn23cz8k96jq6bka51s-gpgme-1.15.1/include -I/gnu/store/imh6q627pj1jpcxdzjpvdwmlwh8kl5kw-libassuan-2.5.5/include -I/gnu/store/pilv2s68v4xamxwk1ahfy7q32j6wnf7l-libgpg-error-1.42/include -I/usr/local/include -fpic -g -O2 -c engine.c -o engine.o gcc -I"/gnu/store/fm6grlr7rvb176ls6kkamadim64w3jli-r-minimal-4.1.3/lib/R/include" -DNDEBUG -I/gnu/store/33x095pip87pxcn23cz8k96jq6bka51s-gpgme-1.15.1/include -I/gnu/store/imh6q627pj1jpcxdzjpvdwmlwh8kl5kw-libassuan-2.5.5/include -I/gnu/store/pilv2s68v4xamxwk1ahfy7q32j6wnf7l-libgpg-error-1.42/include -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o gcc -I"/gnu/store/fm6grlr7rvb176ls6kkamadim64w3jli-r-minimal-4.1.3/lib/R/include" -DNDEBUG -I/gnu/store/33x095pip87pxcn23cz8k96jq6bka51s-gpgme-1.15.1/include -I/gnu/store/imh6q627pj1jpcxdzjpvdwmlwh8kl5kw-libassuan-2.5.5/include -I/gnu/store/pilv2s68v4xamxwk1ahfy7q32j6wnf7l-libgpg-error-1.42/include -I/usr/local/include -fpic -g -O2 -c keysig.c -o keysig.o gcc -I"/gnu/store/fm6grlr7rvb176ls6kkamadim64w3jli-r-minimal-4.1.3/lib/R/include" -DNDEBUG -I/gnu/store/33x095pip87pxcn23cz8k96jq6bka51s-gpgme-1.15.1/include -I/gnu/store/imh6q627pj1jpcxdzjpvdwmlwh8kl5kw-libassuan-2.5.5/include -I/gnu/store/pilv2s68v4xamxwk1ahfy7q32j6wnf7l-libgpg-error-1.42/include -I/usr/local/include -fpic -g -O2 -c options.c -o options.o gcc -I"/gnu/store/fm6grlr7rvb176ls6kkamadim64w3jli-r-minimal-4.1.3/lib/R/include" -DNDEBUG
