Maria,
This may sound simplistic but I find that if I have problems such as this the 
first thing I do is try a new batch of the staining reagents. If you haven't 
had problems before then something must have changed either in your protocols 
or your reagents. It could be that your heat retrieval reagents are too old or 
contain detergents that remove some of the proteins you are looking for. Some 
of the proprietary heat retrieval reagents that allow you to heat retrieve 
without having to dewax  by going through xylene have been shown to change the 
nuclear staining pattern and create what appear to be nuclei that are full of 
vacuoles.
Also if the celloidion is not completely removed during your staining it may be 
stopping any of the higher molecular weight stains from penetrating the cells. 
Try leaving your sections in acetone for a number of changes to ensure full 
removal of the celloidion.
Regards
Steve Weston
University of Tasmania
Breathe-Well CRE
Lab Manager
0408990859




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