[jira] [Commented] (AIRAVATA-3051) Output files configured with wildcard is not brought back and displayed in the Django summary page.
[ https://issues.apache.org/jira/browse/AIRAVATA-3051?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16854145#comment-16854145 ] Dimuthu Upeksha commented on AIRAVATA-3051: --- Fixed in [https://github.com/apache/airavata/commit/d4a209d042dd36fe9f86a706e783c3c3ee8a6ec8] > Output files configured with wildcard is not brought back and displayed in > the Django summary page. > --- > > Key: AIRAVATA-3051 > URL: https://issues.apache.org/jira/browse/AIRAVATA-3051 > Project: Airavata > Issue Type: Sub-task > Components: Django Portal >Affects Versions: 0.18 > Environment: https://beta-sciencegateway.brylinski.org >Reporter: Eroma >Assignee: Marcus Christie >Priority: Major > Attachments: Screen Shot 2019-05-30 at 8.40.01 AM.png, Screen Shot > 2019-05-30 at 8.40.08 AM.png, Screen Shot 2019-05-30 at 8.42.46 AM.png > > > # Submitted a job with an application where there are 5 output files. > # The defined outputs are STDERR. STDOUT and two specifically defined (full > output file name given) tar files and another tar file defined with wildcard > (*.tar) > # The job was successfully completed and all the files are available in the > working directory. > # In the PGA storage only the files which the defined with the complete name > was brought back. > # STDOUT, STDERR and the wild card output file is not in the storage. > # Hence they are not displayed and downloadable in the summary page. > # Apart from this in output section of the summary page there are paths > given to all the .tar files as a string. > # Please see all the images attached to this. > # exp ID: > eFindSite_on_May_30,_2019_1:38_AM_85ab2ab9-a1c0-427c-9fb3-ccde9facd8f1 > h5. TODO > * [ ] Don't display an experiment output entry when the type if URI but the > value is not a data product URI -- This message was sent by Atlassian JIRA (v7.6.3#76005)
[jira] [Assigned] (AIRAVATA-3051) Output files configured with wildcard is not brought back and displayed in the Django summary page.
[ https://issues.apache.org/jira/browse/AIRAVATA-3051?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Dimuthu Upeksha reassigned AIRAVATA-3051: - Assignee: Dimuthu Upeksha (was: Marcus Christie) > Output files configured with wildcard is not brought back and displayed in > the Django summary page. > --- > > Key: AIRAVATA-3051 > URL: https://issues.apache.org/jira/browse/AIRAVATA-3051 > Project: Airavata > Issue Type: Sub-task > Components: Django Portal >Affects Versions: 0.18 > Environment: https://beta-sciencegateway.brylinski.org >Reporter: Eroma >Assignee: Dimuthu Upeksha >Priority: Major > Attachments: Screen Shot 2019-05-30 at 8.40.01 AM.png, Screen Shot > 2019-05-30 at 8.40.08 AM.png, Screen Shot 2019-05-30 at 8.42.46 AM.png > > > # Submitted a job with an application where there are 5 output files. > # The defined outputs are STDERR. STDOUT and two specifically defined (full > output file name given) tar files and another tar file defined with wildcard > (*.tar) > # The job was successfully completed and all the files are available in the > working directory. > # In the PGA storage only the files which the defined with the complete name > was brought back. > # STDOUT, STDERR and the wild card output file is not in the storage. > # Hence they are not displayed and downloadable in the summary page. > # Apart from this in output section of the summary page there are paths > given to all the .tar files as a string. > # Please see all the images attached to this. > # exp ID: > eFindSite_on_May_30,_2019_1:38_AM_85ab2ab9-a1c0-427c-9fb3-ccde9facd8f1 > h5. TODO > * [ ] Don't display an experiment output entry when the type if URI but the > value is not a data product URI -- This message was sent by Atlassian JIRA (v7.6.3#76005)
[jira] [Created] (AIRAVATA-3058) Cascade delete of app catalog entries
Suresh Marru created AIRAVATA-3058: -- Summary: Cascade delete of app catalog entries Key: AIRAVATA-3058 URL: https://issues.apache.org/jira/browse/AIRAVATA-3058 Project: Airavata Issue Type: Improvement Components: Airavata API, Registry API Affects Versions: 0.17 Reporter: Suresh Marru Fix For: 0.18 Deleting linked records in app catalog like storage and compute resources have adverse effects when they have actively used references. For instance, deleting a storage resource used by a gateway will fail queried to fetch gateway preferences. A solution will be to check all usages of a resource before deleting. To start with we need to check for references in gateway preferences for storage and compute resources before we allow these to be deleted. -- This message was sent by Atlassian JIRA (v7.6.3#76005)
[jira] [Commented] (AIRAVATA-2992) Experiment clone fails when original input files are not available
[
https://issues.apache.org/jira/browse/AIRAVATA-2992?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16854022#comment-16854022
]
ASF subversion and git services commented on AIRAVATA-2992:
---
Commit a4d540c838a90b3e023612a6d3c6048ef031782b in airavata-php-gateway's
branch refs/heads/dreg-gateway from Marcus Christie
[ https://gitbox.apache.org/repos/asf?p=airavata-php-gateway.git;h=a4d540c ]
AIRAVATA-2992 Ignore non-existent input file replicas when cloning
> Experiment clone fails when original input files are not available
> --
>
> Key: AIRAVATA-2992
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2992
> Project: Airavata
> Issue Type: Bug
> Components: PGA PHP Web Gateway
>Reporter: Marcus Christie
>Assignee: Marcus Christie
>Priority: Major
>
> Error message:
> {noformat}
> Failed to clone experiment:
> copy(/var/www/portals/gateway-user-data/simvascular/sveroma2017/TestProjectApril2018/Clone_of_Test_Sim11524605337/bct.dat):
>
> failed to open stream: No such file or directory
> {noformat}
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[jira] [Commented] (AIRAVATA-2992) Experiment clone fails when original input files are not available
[
https://issues.apache.org/jira/browse/AIRAVATA-2992?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16854023#comment-16854023
]
ASF subversion and git services commented on AIRAVATA-2992:
---
Commit 8915e4063b7f93cd648d87e7b5ce2e375e9dbb50 in airavata-php-gateway's
branch refs/heads/dreg-gateway from Marcus Christie
[ https://gitbox.apache.org/repos/asf?p=airavata-php-gateway.git;h=8915e40 ]
AIRAVATA-2992 Skip display of experiment inputs that are null
> Experiment clone fails when original input files are not available
> --
>
> Key: AIRAVATA-2992
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2992
> Project: Airavata
> Issue Type: Bug
> Components: PGA PHP Web Gateway
>Reporter: Marcus Christie
>Assignee: Marcus Christie
>Priority: Major
>
> Error message:
> {noformat}
> Failed to clone experiment:
> copy(/var/www/portals/gateway-user-data/simvascular/sveroma2017/TestProjectApril2018/Clone_of_Test_Sim11524605337/bct.dat):
>
> failed to open stream: No such file or directory
> {noformat}
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[jira] [Commented] (AIRAVATA-2995) Cloned experiment was able to submit without mandatory input files.
[ https://issues.apache.org/jira/browse/AIRAVATA-2995?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16854024#comment-16854024 ] ASF subversion and git services commented on AIRAVATA-2995: --- Commit 6f7d3b589e0804aacfd54eb4d8b4c4705bf1cb4f in airavata-php-gateway's branch refs/heads/dreg-gateway from Marcus Christie [ https://gitbox.apache.org/repos/asf?p=airavata-php-gateway.git;h=6f7d3b5 ] AIRAVATA-2995 Require input when file doesn't exist > Cloned experiment was able to submit without mandatory input files. > --- > > Key: AIRAVATA-2995 > URL: https://issues.apache.org/jira/browse/AIRAVATA-2995 > Project: Airavata > Issue Type: Bug > Components: PGA PHP Web Gateway >Affects Versions: 0.18 > Environment: https://gateway.simvascular.org >Reporter: Eroma >Assignee: Marcus Christie >Priority: Major > Fix For: 0.18 > > > # Cloned an expriment without input files (files removed as part of strage > cleaning process) > # The new cloned one > (Clone_of_Test-Sim1_3bd871fa-09b6-494e-b71b-811ce548880b) was able to save > and launch without the input files. > # experiment in CREATED, not moving further or failing. > # Error in api log : 2019-03-13 01:47:35,348 [pool-31-thread-5] ERROR > o.a.a.o.s.OrchestratorServerHandler > experiment_id=Clone_of_Test-Sim1_3bd871fa-09b6-494e-b71b-811ce548880b, > gateway_id=simvascular - Experiment launch failed due to Thrift conversion > error, experimentId: Clone_of_Test-Sim1_3bd871fa-09b6-494e-b71b-811ce548880b, > gatewayId: simvascular > org.apache.thrift.TException: Experiment > 'Clone_of_Test-Sim1_3bd871fa-09b6-494e-b71b-811ce548880b' launch failed. > Unable to figureout execution type for application > SimVascular_3fe8243b-0191-499e-a2ec-9d77fde9ce36 > at > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:251) > at > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:666) > at > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.access$500(OrchestratorServerHandler.java:76) > at > org.apache.airavata.orchestrator.server.OrchestratorServerHandler$ExperimentHandler.onMessage(OrchestratorServerHandler.java:622) > at > org.apache.airavata.messaging.core.impl.ExperimentConsumer.handleDelivery(ExperimentConsumer.java:84) > at > com.rabbitmq.client.impl.ConsumerDispatcher$5.run(ConsumerDispatcher.java:144) > at > com.rabbitmq.client.impl.ConsumerWorkService$WorkPoolRunnable.run(ConsumerWorkService.java:99) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:748) > Caused by: java.lang.NullPointerException: null > at > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.lambda$launchExperiment$2(OrchestratorServerHandler.java:178) > at > java.util.ArrayList$ArrayListSpliterator.forEachRemaining(ArrayList.java:1374) > at > java.util.stream.ReferencePipeline$Head.forEach(ReferencePipeline.java:580) > at > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:177) > ... 9 common frames omitted -- This message was sent by Atlassian JIRA (v7.6.3#76005)
