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https://issues.apache.org/jira/browse/AIRAVATA-2831?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Dimuthu Upeksha resolved AIRAVATA-2831.
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Resolution: Fixed
This should be fixed after data staging retrying implementation
> Experiment FAILED with an error on output file staging! But the file
> referring in the error is actually downloaded and available in storage.
> --------------------------------------------------------------------------------------------------------------------------------------------
>
> Key: AIRAVATA-2831
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2831
> Project: Airavata
> Issue Type: Bug
> Components: helix implementation
> Affects Versions: 0.18
> Environment: https://staging.seagrid.org/
> Reporter: Eroma
> Assignee: Dimuthu Upeksha
> Priority: Major
> Fix For: 0.18
>
>
> # When experiments were launched and jobs were submitted bot real time
> monitoring and email monitoring was stopped.
> # Started realtime monitoring and then the job statuses got updated
> correctly.
> # Then stopped the realtime monitoring and started email monitoing.
> # Job statuses got updated correctly but experiment status of some are
> FAILED with error [1]
> # But the file is already transfered.
> # exp ID: SLM005-QEspresso-JS:2_1fec2375-945b-4b21-8157-5e91b1391312 and job
> iD: 237.torque-server
> [1]
> |org.apache.airavata.helix.impl.task.TaskOnFailException: Error Code :
> 01ee4646-2139-40b8-840e-348e37b1823f, Task
> TASK_f5726ea4-638f-4c41-9904-0b3c766fcaee failed due to Error while checking
> the file
> /N/SEAGrid_scratch//PROCESS_f0192239-787a-4f8f-b63e-7cb45a837f4a/Quantum_Espresso.stdout
> existence, net.schmizz.sshj.connection.ConnectionException:
> [CONNECTION_LOST] Did not receive any keep-alive response for 25 seconds at
> org.apache.airavata.helix.impl.task.AiravataTask.onFail(AiravataTask.java:102)
> at
> org.apache.airavata.helix.impl.task.staging.OutputDataStagingTask.onRun(OutputDataStagingTask.java:187)
> at
> org.apache.airavata.helix.impl.task.AiravataTask.onRun(AiravataTask.java:311)
> at org.apache.airavata.helix.core.AbstractTask.run(AbstractTask.java:90) at
> org.apache.helix.task.TaskRunner.run(TaskRunner.java:71) at
> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at
> java.util.concurrent.FutureTask.run(FutureTask.java:266) at
> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
> at
> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:748) Caused by:
> org.apache.airavata.agents.api.AgentException:
> net.schmizz.sshj.connection.ConnectionException: [CONNECTION_LOST] Did not
> receive any keep-alive response for 25 seconds at
> org.apache.airavata.helix.adaptor.SSHJAgentAdaptor.doesFileExist(SSHJAgentAdaptor.java:183)
> at
> org.apache.airavata.helix.impl.task.staging.DataStagingTask.transferFileToStorage(DataStagingTask.java:141)
> at
> org.apache.airavata.helix.impl.task.staging.OutputDataStagingTask.onRun(OutputDataStagingTask.java:172)
> ... 10 more Caused by: net.schmizz.sshj.connection.ConnectionException:
> [CONNECTION_LOST] Did not receive any keep-alive response for 25 seconds at
> net.schmizz.keepalive.KeepAliveRunner.checkMaxReached(KeepAliveRunner.java:64)
> at
> net.schmizz.keepalive.KeepAliveRunner.doKeepAlive(KeepAliveRunner.java:56) at
> net.schmizz.keepalive.KeepAlive.run(KeepAlive.java:63)|
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