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https://issues.apache.org/jira/browse/AIRAVATA-2833?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Dimuthu Upeksha resolved AIRAVATA-2833.
---------------------------------------
Resolution: Fixed
Added job submission retrying logic
> Several experiments failed at various stages of job submission due to
> connection lost
> -------------------------------------------------------------------------------------
>
> Key: AIRAVATA-2833
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2833
> Project: Airavata
> Issue Type: Bug
> Components: helix implementation
> Affects Versions: 0.18
> Environment: https://staging.seagrid.org/
> Reporter: Eroma
> Assignee: Dimuthu Upeksha
> Priority: Major
> Fix For: 0.18
>
>
> While submitting a batch of jobs, several failed in a single cluster due to
> connection lost.
> Experiment has failed at uploading input file, output transfer and creating
> archive.tar. Error in log [1]. Anything we could do here? Try again? resubmit
> the task?
>
>
> Exi ID:
> SLM001-QEspresso-JS:2_d01e50dd-74fe-434a-87b3-e4668b827da5
> SLM001-QEspresso-JS:1_b29c6476-8944-4f6d-8946-b2e9f20b2acf
> SLM001-QEspresso-JS:0_cd3d980d-017e-4ebe-91f7-85d1157feb94
>
> [1]
> org.apache.airavata.helix.impl.task.TaskOnFailException: Error Code :
> cc1c8295-e5ec-44bf-b705-eceddfca3b1a, Task
> TASK_b6ea333e-7468-4221-8b87-09050d7d053c failed due to Failed uploading the
> input file to
> /N/SEAGrid_scratch/PROCESS_1694a674-3dd7-4693-868e-b74444fd2b8d/ from local
> path
> /tmp/PROCESS_1694a674-3dd7-4693-868e-b74444fd2b8d/temp_inputs/Al.sample1.in,
> net.schmizz.sshj.connection.ConnectionException: [CONNECTION_LOST] Did not
> receive any keep-alive response for 25 seconds at
> org.apache.airavata.helix.impl.task.AiravataTask.onFail(AiravataTask.java:102)
> at
> org.apache.airavata.helix.impl.task.staging.InputDataStagingTask.onRun(InputDataStagingTask.java:137)
> at
> org.apache.airavata.helix.impl.task.AiravataTask.onRun(AiravataTask.java:311)
> at org.apache.airavata.helix.core.AbstractTask.run(AbstractTask.java:90) at
> org.apache.helix.task.TaskRunner.run(TaskRunner.java:71) at
> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at
> java.util.concurrent.FutureTask.run(FutureTask.java:266) at
> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
> at
> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:748) Caused by:
> org.apache.airavata.agents.api.AgentException:
> net.schmizz.sshj.connection.ConnectionException: [CONNECTION_LOST] Did not
> receive any keep-alive response for 25 seconds at
> org.apache.airavata.helix.adaptor.SSHJAgentAdaptor.copyFileTo(SSHJAgentAdaptor.java:155)
> at
> org.apache.airavata.helix.impl.task.staging.InputDataStagingTask.onRun(InputDataStagingTask.java:119)
> ... 10 more Caused by: net.schmizz.sshj.connection.ConnectionException:
> [CONNECTION_LOST] Did not receive any keep-alive response for 25 seconds at
> net.schmizz.keepalive.KeepAliveRunner.checkMaxReached(KeepAliveRunner.java:64)
> at
> net.schmizz.keepalive.KeepAliveRunner.doKeepAlive(KeepAliveRunner.java:56) at
> net.schmizz.keepalive.KeepAlive.run(KeepAlive.java:63)
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