[jira] [Created] (FUNCTOR-13) EachElement should be able to work on any Iterable

2012-01-20 Thread Matt Benson (Created) (JIRA)
EachElement should be able to work on any Iterable
--

 Key: FUNCTOR-13
 URL: https://issues.apache.org/jira/browse/FUNCTOR-13
 Project: Commons Functor
  Issue Type: Improvement
Reporter: Emmanuel Bourg


from http://markmail.org/message/ythw55yad5lrvqrj

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[jira] [Commented] (FUNCTOR-12) improve test coverage

2012-01-20 Thread Matt Benson (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/FUNCTOR-12?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13190289#comment-13190289
 ] 

Matt Benson commented on FUNCTOR-12:


Also most {{equals}}/{{hashCode}} methods are not tested.

> improve test coverage
> -
>
> Key: FUNCTOR-12
> URL: https://issues.apache.org/jira/browse/FUNCTOR-12
> Project: Commons Functor
>  Issue Type: Improvement
>Reporter: Emmanuel Bourg
>
> Specifically the composite package contains untested classes, per 
> http://markmail.org/message/ythw55yad5lrvqrj

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[jira] [Created] (FUNCTOR-12) improve test coverage

2012-01-20 Thread Matt Benson (Created) (JIRA)
improve test coverage
-

 Key: FUNCTOR-12
 URL: https://issues.apache.org/jira/browse/FUNCTOR-12
 Project: Commons Functor
  Issue Type: Improvement
Reporter: Emmanuel Bourg


Specifically the composite package contains untested classes, per 
http://markmail.org/message/ythw55yad5lrvqrj

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[jira] [Created] (FUNCTOR-11) Reduce API clutter by removing or reducing scope of FunctorType.equals(FunctorType) methods

2012-01-20 Thread Matt Benson (Created) (JIRA)
Reduce API clutter by removing or reducing scope of 
FunctorType.equals(FunctorType) methods
---

 Key: FUNCTOR-11
 URL: https://issues.apache.org/jira/browse/FUNCTOR-11
 Project: Commons Functor
  Issue Type: Improvement
Reporter: Emmanuel Bourg


>From http://markmail.org/message/ythw55yad5lrvqrj

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[jira] [Updated] (FUNCTOR-10) throw NullPointerException for illegal null values

2012-01-20 Thread Matt Benson (Updated) (JIRA)

 [ 
https://issues.apache.org/jira/browse/FUNCTOR-10?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Matt Benson updated FUNCTOR-10:
---

Description: 
for better alignment with JSE, {{[lang]}}, etc.  Currently 
{{IllegalArgumentException}} is thrown.
Per http://markmail.org/message/ythw55yad5lrvqrj

  was:for better alignment with JSE, {{[lang]}}, etc.  Currently 
{{IllegalArgumentException}} is thrown.


> throw NullPointerException for illegal null values
> --
>
> Key: FUNCTOR-10
> URL: https://issues.apache.org/jira/browse/FUNCTOR-10
> Project: Commons Functor
>  Issue Type: Improvement
>Reporter: Emmanuel Bourg
>
> for better alignment with JSE, {{[lang]}}, etc.  Currently 
> {{IllegalArgumentException}} is thrown.
> Per http://markmail.org/message/ythw55yad5lrvqrj

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[jira] [Created] (FUNCTOR-10) throw NullPointerException for illegal null values

2012-01-20 Thread Matt Benson (Created) (JIRA)
throw NullPointerException for illegal null values
--

 Key: FUNCTOR-10
 URL: https://issues.apache.org/jira/browse/FUNCTOR-10
 Project: Commons Functor
  Issue Type: Improvement
Reporter: Emmanuel Bourg


for better alignment with JSE, {{[lang]}}, etc.  Currently 
{{IllegalArgumentException}} is thrown.

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[jira] [Issue Comment Edited] (SANDBOX-358) Early return/termination for graph visit

2012-01-20 Thread Claudio Squarcella (Issue Comment Edited) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-358?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189906#comment-13189906
 ] 

Claudio Squarcella edited comment on SANDBOX-358 at 1/21/12 1:37 AM:
-

Hi,

so I actually changed signatures for methods in {{GraphVisitHandler}}:
* {{discoverVertex}} and {{discoverEdge}} now tell the algorithm if the 
corresponding {{Vertex}} and {{Edge}} should be expanded (i.e. if their 
neighbors should be added to the visit queue);
* {{finishVertex}} and {{finishEdge}} tell if the algorithm can be ended 
prematurely (because the search is complete, e.g. the target element was found).

All tests still work. I hope you guys like this one :)
Claudio

  was (Author: claudio.squarcella):
Hi,

so I actually changed signatures for methods in {{GraphVisitHandler}}:
* {{discoverVertex}} and {{discoverEdge}} now tell the algorithm if the 
corresponding {{Vertex}} and {{Edge}} should be expanded (i.e. if their 
neighbors should be added to the visit queue);
* {{finishVertex}} and {{finishEdge}} tell if the algorithm can be ended 
prematurely (because the search is complete, e.g. before the target element was 
found).

All tests still work. I hope you guys like this one :)
Claudio
  
> Early return/termination for graph visit
> 
>
> Key: SANDBOX-358
> URL: https://issues.apache.org/jira/browse/SANDBOX-358
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: Graph
>Reporter: Claudio Squarcella
>Assignee: Simone Tripodi
>Priority: Minor
>  Labels: graph, visit, visithandler
> Attachments: EarlyTerminationAndSubgraphSkipForSearchAlgorithms.patch
>
>   Original Estimate: 72h
>  Remaining Estimate: 72h
>
> Hello,
> the current implementations in the class {{Visit}} (package 
> {{org.apache.commons.graph.visit}}) do not include the possibility to stop 
> the search prematurely. That would be more natural (and faster) for many 
> kinds of search, e.g. when looking for the first occurrence of a specific 
> pattern (vertex, path with certain features, etc).
> The easiest solution: changing all method signatures in {{GraphVisitHandler}} 
> from {{void}} to {{boolean}}, forcing the handler to answer the question: 
> _should I continue?_ 
> I understand semantics get a bit entangled (well, not with an appropriate 
> documentation!), so I am open to more verbose options: e.g. a method 
> {{isSearchComplete}} to call after every step... but that would only be more 
> verbose, wouldn't it?
> Waiting for feedback and ready to patch :-)
> Claudio

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[jira] [Resolved] (JXPATH-139) Wrong xpath expression passed to extension function does not throw JXPathNotFoundException

2012-01-20 Thread Matt Benson (Resolved) (JIRA)

 [ 
https://issues.apache.org/jira/browse/JXPATH-139?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Matt Benson resolved JXPATH-139.


Resolution: Invalid

Hello, and sorry for the long wait.  I have looked at this before, but have 
finally realized that this issue is invalid.  You must bear in mind that this 
is xpath, so when you pass a path to a function, you are really passing the set 
of nodes that matches that query, in this case "those nodes relative to the 
current path (root) whose qname matches 'valueXXX'."  This empty nodeset is 
then converted to a string, yielding the value "".  Unfortunately this does 
mean that your jxpath expressions will not automatically break when 
refactorings change property names.

> Wrong xpath expression passed to extension function does not throw 
> JXPathNotFoundException
> --
>
> Key: JXPATH-139
> URL: https://issues.apache.org/jira/browse/JXPATH-139
> Project: Commons JXPath
>  Issue Type: Bug
>Affects Versions: 1.3
>Reporter: Petras
>
> If xpath expression, which do not map to bean properties, is passed to 
> extension function, JXPathNotFoundException is not thrown. It seems 
> inconsistent behaviour and it is difficult to test these expressions if they 
> do not fail for example after code refactoring.
> Here is a test case:
> {code}
> // Extension function
> public static class StringFunctions {
>   public static String left(String param, int len) {
>   System.out.println("Received: '" + param + "'");
>   if(param == null) return null;
>   return param.substring(0, Math.min(len, param.length()));
>   }
> }
> {code}
> {code}
> // Value object to use
> public class VO {
>   String value = null;
>   public String getValue() { return value; }
>   public void setValue(String value) { this.value = value; }
> }
> {code}
> {code}
> @Test
> public void testLeftFunctionWrongPath() {
>   VO vo = new VO();
>   vo.setValue("1234567890");
>   JXPathContext ctx = JXPathContext.newContext(vo);
>   ctx.setFunctions(new ClassFunctions(StringFunctions.class, "util"));
>   
>   // OK, StringFunctions.left() receives "1234567890"
>   path = "util:left(value, 5)";
>   ctx.getValue(path);
>   
>   // JXPathNotFoundException is not thrown, StringFunctions.left() 
> receives an empty string
>   String wrongPath = "util:left(valueXXX, 5)";
>   ctx.getValue(wrongPath);
> }
> {code}

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[jira] [Commented] (MATH-677) About package "transform"

2012-01-20 Thread Commented

[ 
https://issues.apache.org/jira/browse/MATH-677?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13190111#comment-13190111
 ] 

Sébastien Brisard commented on MATH-677:


In {{r1234136}}, added a new
{{RealTransformAbstractTest}} allowing for automatic testing of 
{{RealTransformers}}, with various data sizes (not only powers of two and the 
likes). This will ease testing procedures if we ever implement transforms for 
other types of data sizes.

> About package "transform"
> -
>
> Key: MATH-677
> URL: https://issues.apache.org/jira/browse/MATH-677
> Project: Commons Math
>  Issue Type: Improvement
>Reporter: Gilles
>Assignee: Sébastien Brisard
>Priority: Minor
>  Labels: api-change
> Fix For: 3.0
>
>
> Classes in package "o.a.c.m.transform" might require some changes in order to 
> conform to goals set for the next major release.
> Some observations:
> # Exceptions
> ## Should remove use of deprecated "MathRuntimeException"
> ## Should throw more specific "Math...Exception" instances instead of 
> standard IAE
> # Interface "RealTransformer" (and implementations) contain non-conformant 
> method names (e.g. "inversetransform" instead of "inverseTransform"). 
> {color:red}Fixed in {{r1208293}}.{color}
> # "FastFourierTransformer":
> ## Methods "mdfft" and "verifyDataSet" take an argument of type "Object" (to 
> allow an argument with an unspecified number of dimensions)
> ## The "RootsOfUnity" helper class could be moved to the "complex" package
> ## For clarity, multidimensional transform should be moved to a class of its 
> own (and I also wonder whether the "MultiDimensionalComplexMatrix" name is 
> not misleading)
> # "FastFourierTransformer", "FastSineTranformer" and "FastCosineTranformer" 
> define public methods "tranform2" and "inversetransform2" but they are not 
> part of an interface. {color:red}As of {{r1213157}}, these methods have been 
> removed, and replaced by factory methods {{create()}} and {{createUnitary()}} 
> (FFT) or {{createOrthogonal()}} (FCT, FST).{color}
> # Code uses variables that start with an uppercase. {color:red}Fixed, 
> together with various formatting issues.{color}
> # "FastHadamardTransformer" contains illegible developer documentation (see 
> Javadoc for protected method "fht"). {color:red}Tried to improve things in 
> {{r1208986}}, but things are still a bit obscure. Besides, the link provided 
> is broken. Will look into that.{color}

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[jira] [Resolved] (SANDBOX-360) Rename Converter to Transformer

2012-01-20 Thread Simone Tripodi (Resolved) (JIRA)

 [ 
https://issues.apache.org/jira/browse/SANDBOX-360?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Simone Tripodi resolved SANDBOX-360.


Resolution: Fixed
  Assignee: Simone Tripodi

Refactor successfully applied, thanks Benedikt and Matt for the hints! see 
[r1234122|https://svn.apache.org/viewvc?view=revision&revision=1234122]

> Rename Converter to Transformer
> ---
>
> Key: SANDBOX-360
> URL: https://issues.apache.org/jira/browse/SANDBOX-360
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
>Assignee: Simone Tripodi
>Priority: Minor
>
> Since org.apache.commons.beanutils2.Converter is essentially a from of a 
> Transformer (see org.apache.commons.collections.Transformer), it should be 
> named this way. The same applies for 
> org.apache.commons.beanutils2.converters.AbstractConverter.

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[jira] [Commented] (SANDBOX-362) Create basic unit tests for all classes

2012-01-20 Thread Simone Tripodi (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-362?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13190075#comment-13190075
 ] 

Simone Tripodi commented on SANDBOX-362:


Your contribution has been applied Benedikt, thanks a lot! see 
[r1234115|https://svn.apache.org/viewvc?view=revision&revision=1234115]

I have to ask you anyway the favor of, for future contributions, read and 
follow the [On Contributing Patches|http://commons.apache.org/patches.html] 
guide, widely adopted in commons.

For that case I applied the contribution since it is an addition class, but 
when modifying the original source code, the patch fits better because shows 
what has been modified.

Dankeshön!!!

> Create basic unit tests for all classes
> ---
>
> Key: SANDBOX-362
> URL: https://issues.apache.org/jira/browse/SANDBOX-362
> Project: Commons Sandbox
>  Issue Type: Test
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
> Attachments: ArgumentTest.zip
>
>
> Back up all existing implementations with unit tests:
> * Argument
> * Assertions
> * BeanUtils
> * DefaultBeanAccessor
> * DefaultClassAccessor
> * MethodRegistry
> * TypeUtils

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[jira] [Resolved] (CONFIGURATION-463) AbstractFileConfiguration.load(String filename) returns with current directory changed

2012-01-20 Thread Oliver Heger (Resolved) (JIRA)

 [ 
https://issues.apache.org/jira/browse/CONFIGURATION-463?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Oliver Heger resolved CONFIGURATION-463.


   Resolution: Fixed
Fix Version/s: 1.8

The Javadoc of the class and the load() methods was updated accordingly. Fixed 
in revision 1234118.

> AbstractFileConfiguration.load(String filename) returns with current 
> directory changed
> --
>
> Key: CONFIGURATION-463
> URL: https://issues.apache.org/jira/browse/CONFIGURATION-463
> Project: Commons Configuration
>  Issue Type: Bug
>Affects Versions: 1.6, 1.7
> Environment: Windows7, Linux (Fedora14)
>Reporter: James Garrison
> Fix For: 1.8
>
>
> {code:java}
> PropertiesConfiguration pc = new PropertiesConfiguration();
> ...
> for (String f : cl.getArgs())
> {
> pc.load(f);
> }
> {code}
> Invoked in directory /home/me/test with several relative paths, i.e. 
> ./sub1/a.cfg ./sub2/b.cfg
> First file loads successfully. Upon return from the first invocation of 
> pc.load(f), the current directory has been changed to the absolute path of 
> the loaded file (/home/me/test/sub1).  Thus, subsequent paths given as 
> relative references to the original user.dir fail to be found.
> If this is the expected behavior, it should be documented.

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[jira] [Resolved] (SANDBOX-358) Early return/termination for graph visit

2012-01-20 Thread Simone Tripodi (Resolved) (JIRA)

 [ 
https://issues.apache.org/jira/browse/SANDBOX-358?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Simone Tripodi resolved SANDBOX-358.


Resolution: Fixed
  Assignee: Simone Tripodi

thanks once again for your great contributions Claudio, your patch has been 
successfully applied, see 
[r1234109|https://svn.apache.org/viewvc?view=revision&revision=1234109]

> Early return/termination for graph visit
> 
>
> Key: SANDBOX-358
> URL: https://issues.apache.org/jira/browse/SANDBOX-358
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: Graph
>Reporter: Claudio Squarcella
>Assignee: Simone Tripodi
>Priority: Minor
>  Labels: graph, visit, visithandler
> Attachments: EarlyTerminationAndSubgraphSkipForSearchAlgorithms.patch
>
>   Original Estimate: 72h
>  Remaining Estimate: 72h
>
> Hello,
> the current implementations in the class {{Visit}} (package 
> {{org.apache.commons.graph.visit}}) do not include the possibility to stop 
> the search prematurely. That would be more natural (and faster) for many 
> kinds of search, e.g. when looking for the first occurrence of a specific 
> pattern (vertex, path with certain features, etc).
> The easiest solution: changing all method signatures in {{GraphVisitHandler}} 
> from {{void}} to {{boolean}}, forcing the handler to answer the question: 
> _should I continue?_ 
> I understand semantics get a bit entangled (well, not with an appropriate 
> documentation!), so I am open to more verbose options: e.g. a method 
> {{isSearchComplete}} to call after every step... but that would only be more 
> verbose, wouldn't it?
> Waiting for feedback and ready to patch :-)
> Claudio

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[jira] [Updated] (LANG-786) StringUtils equals() relies on undefined behavior

2012-01-20 Thread Daniel Trebbien (Updated) (JIRA)

 [ 
https://issues.apache.org/jira/browse/LANG-786?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Daniel Trebbien updated LANG-786:
-

Attachment: equals.patch

Fix

This re-introduces StringUtils#equals(String, String) and changes 
StringUtils#equals(CharSequence, CharSequence) to compare chars individually.

> StringUtils equals() relies on undefined behavior
> -
>
> Key: LANG-786
> URL: https://issues.apache.org/jira/browse/LANG-786
> Project: Commons Lang
>  Issue Type: Bug
>  Components: lang.*
>Affects Versions: 3.0
> Environment: java version "1.7.0_02"
> Java(TM) SE Runtime Environment (build 1.7.0_02-b13)
> Java HotSpot(TM) 64-Bit Server VM (build 22.0-b10, mixed mode)
> Fedora 15 AMD64
>Reporter: Daniel Trebbien
>  Labels: StringUtils
> Attachments: equals.patch
>
>
> Since the {{java.lang.CharSequence}} class was first introduced in 1.4, the 
> JavaDoc block has contained the following note:
> {quote}
> This interface does not refine the general contracts of the equals and 
> hashCode methods. The result of comparing two objects that implement 
> CharSequence is therefore, in general, undefined. Each object may be 
> implemented by a different class, and there is no guarantee that each class 
> will be capable of testing its instances for equality with those of the other.
> {quote}
> When the signature of the StringUtils equals() method was changed from 
> {{equals(String, String)}} to {{equals(CharSequence, CharSequence)}} in 
> R920543, the implementation still relied on calling 
> CharSequence#equals(Object) even though, in general, the result is undefined.
> One example where {{equals(Object)}} returns {{false}} even though, as 
> CharSequences, two objects represent equal sequences is when one object is an 
> instance of {{javax.lang.model.element.Name}} and the other object is a 
> String.

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[jira] [Created] (LANG-786) StringUtils equals() relies on undefined behavior

2012-01-20 Thread Daniel Trebbien (Created) (JIRA)
StringUtils equals() relies on undefined behavior
-

 Key: LANG-786
 URL: https://issues.apache.org/jira/browse/LANG-786
 Project: Commons Lang
  Issue Type: Bug
  Components: lang.*
Affects Versions: 3.0
 Environment: java version "1.7.0_02"
Java(TM) SE Runtime Environment (build 1.7.0_02-b13)
Java HotSpot(TM) 64-Bit Server VM (build 22.0-b10, mixed mode)

Fedora 15 AMD64
Reporter: Daniel Trebbien


Since the {{java.lang.CharSequence}} class was first introduced in 1.4, the 
JavaDoc block has contained the following note:

{quote}
This interface does not refine the general contracts of the equals and hashCode 
methods. The result of comparing two objects that implement CharSequence is 
therefore, in general, undefined. Each object may be implemented by a different 
class, and there is no guarantee that each class will be capable of testing its 
instances for equality with those of the other.
{quote}

When the signature of the StringUtils equals() method was changed from 
{{equals(String, String)}} to {{equals(CharSequence, CharSequence)}} in 
R920543, the implementation still relied on calling CharSequence#equals(Object) 
even though, in general, the result is undefined.

One example where {{equals(Object)}} returns {{false}} even though, as 
CharSequences, two objects represent equal sequences is when one object is an 
instance of {{javax.lang.model.element.Name}} and the other object is a String.

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[jira] [Commented] (VFS-307) VFS issues a lot of FTP commands when listing a directory

2012-01-20 Thread Ibrahim Hasbini (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/VFS-307?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=1319#comment-1319
 ] 

Ibrahim Hasbini commented on VFS-307:
-

Hello Mario,

I've been debugging an issue where folder creation was failing and found the 
method "FTPFile[] listFilesInDirectory(String relPath)" in FTPClientWrapper and 
this issue.

It seems some FTP servers do not return an error code when the LIST command 
gets a path that contains space, but simply return an empty list of files and a 
success code.
This causes solution 2 mentioned above to never fallback to "change directory + 
list", this later causes VFS to think that a folder does not exist while in 
reality it does (eventually causing an exception when we try to create that 
existing folder).

Is it ok to always fallback to "change directory + list" when a path contains 
spaces?

Thanks.

> VFS issues a lot of FTP commands when listing a directory
> -
>
> Key: VFS-307
> URL: https://issues.apache.org/jira/browse/VFS-307
> Project: Commons VFS
>  Issue Type: Improvement
>Reporter: Mario Ivankovits
> Fix For: Nightly Builds
>
>
> Hello Mario,
>  
> We at JetBrains are implementing support for (S)FTP sync in our IDEs using 
> Commons VFS. When looking at the performance, we noticed that FTP provider is 
> somewhat not perfect: see my discussion with Ralph. 
>  
> So the question is: why FtpClientWrapper changes the current directory to 
> issue 'LIST' command and restoring it back afterwards instead of issuing 
> single 'LIST '? 
>  
> Subversion says it was you who introduced this behavior far back in 2008. 
> Hope you remember those times and reason why you did this.
>  
> Thanks a lot in advance,
>  
> Kirill Safonov
> JetBrains, Inc
> http://www.jetbrains.com
> "Develop with pleasure!"
>  

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[jira] [Updated] (SANDBOX-362) Create basic unit tests for all classes

2012-01-20 Thread Benedikt Ritter (Updated) (JIRA)

 [ 
https://issues.apache.org/jira/browse/SANDBOX-362?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Benedikt Ritter updated SANDBOX-362:


Attachment: ArgumentTest.zip

I've attached a jUnit Test for Argument. Please let me know, what you think 
about it. I've not written test methods for getType() and getValue(), since 
those are backed up by the other methods.

> Create basic unit tests for all classes
> ---
>
> Key: SANDBOX-362
> URL: https://issues.apache.org/jira/browse/SANDBOX-362
> Project: Commons Sandbox
>  Issue Type: Test
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
> Attachments: ArgumentTest.zip
>
>
> Back up all existing implementations with unit tests:
> * Argument
> * Assertions
> * BeanUtils
> * DefaultBeanAccessor
> * DefaultClassAccessor
> * MethodRegistry
> * TypeUtils

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[jira] [Created] (SANDBOX-362) Create basic unit tests for all classes

2012-01-20 Thread Benedikt Ritter (Created) (JIRA)
Create basic unit tests for all classes
---

 Key: SANDBOX-362
 URL: https://issues.apache.org/jira/browse/SANDBOX-362
 Project: Commons Sandbox
  Issue Type: Test
  Components: BeanUtils2
Affects Versions: Nightly Builds
Reporter: Benedikt Ritter


Back up all existing implementations with unit tests:

* Argument
* Assertions
* BeanUtils
* DefaultBeanAccessor
* DefaultClassAccessor
* MethodRegistry
* TypeUtils

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[jira] [Resolved] (JXPATH-154) Resetting the default namespace causes a serious endless loop when requesting .asPath() on a node.

2012-01-20 Thread Matt Benson (Resolved) (JIRA)

 [ 
https://issues.apache.org/jira/browse/JXPATH-154?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Matt Benson resolved JXPATH-154.


   Resolution: Fixed
Fix Version/s: 1.4

> Resetting the default namespace causes a serious endless loop when requesting 
> .asPath() on a node.
> --
>
> Key: JXPATH-154
> URL: https://issues.apache.org/jira/browse/JXPATH-154
> Project: Commons JXPath
>  Issue Type: Bug
>Affects Versions: 1.3
> Environment: jxpath eclipse plugin from orbit
>Reporter: Hugo de Almeida Cocharro
> Fix For: 1.4
>
>
> sample smaller case:
> {code}
> <...>
>  
>   a 
>  
>  
> 
> {code}
> when requesting .asPath() on the 'test' node, it loops in 
> org.apache.commons.jxpath.ri.NamespaceResolver.getPrefix(NodePointer, 
> String), 
> and if it didn't loop it would create a wrong xpath '//b:fo/null:test' 
> DOMNodePointer.asPath().
> So I think that the fix should be in 
> org.apache.commons.jxpath.ri.model.dom.DOMNodePointer.asPath()
> {code}
> 
> String ln = DOMNodePointer.getLocalName(node);
> String nsURI = getNamespaceURI();
> if (nsURI == null) {
> buffer.append(ln);
> buffer.append('[');
> 
> buffer.append(getRelativePositionByName()).append(']');
> }
> else {
> String prefix = 
> getNamespaceResolver().getPrefix(nsURI);
> if (prefix != null) {
> ...
> {code}
> should become
> {code}
> ...
> String ln = DOMNodePointer.getLocalName(node);
> String nsURI = getNamespaceURI();
> if (nsURI == null || nsURI.length() == 0) { // check for 
> empty string which means that the node doesn't have a namespace.
> buffer.append(ln);
> buffer.append('[');
> 
> buffer.append(getRelativePositionByName()).append(']');
> }
> else {
> String prefix = 
> getNamespaceResolver().getPrefix(nsURI);
> if (prefix != null) {
> ...
> {code}

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[jira] [Commented] (JXPATH-154) Resetting the default namespace causes a serious endless loop when requesting .asPath() on a node.

2012-01-20 Thread Matt Benson (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/JXPATH-154?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189959#comment-13189959
 ] 

Matt Benson commented on JXPATH-154:


It is a convention within JXPath code that the empty namespace be represented 
as a Java {{null}}.  Rather than check for {{""}} at the point you identified, 
I have elected to modify DOMNodePointer to translate {{""}} to {{null}} when 
returning its result.  In this manner JXPath's DOM handling will function in 
the same manner as its JDOM handling, and any other callers of the method will 
be fixed as well.


Committed revision 1234036.


> Resetting the default namespace causes a serious endless loop when requesting 
> .asPath() on a node.
> --
>
> Key: JXPATH-154
> URL: https://issues.apache.org/jira/browse/JXPATH-154
> Project: Commons JXPath
>  Issue Type: Bug
>Affects Versions: 1.3
> Environment: jxpath eclipse plugin from orbit
>Reporter: Hugo de Almeida Cocharro
>
> sample smaller case:
> {code}
> <...>
>  
>   a 
>  
>  
> 
> {code}
> when requesting .asPath() on the 'test' node, it loops in 
> org.apache.commons.jxpath.ri.NamespaceResolver.getPrefix(NodePointer, 
> String), 
> and if it didn't loop it would create a wrong xpath '//b:fo/null:test' 
> DOMNodePointer.asPath().
> So I think that the fix should be in 
> org.apache.commons.jxpath.ri.model.dom.DOMNodePointer.asPath()
> {code}
> 
> String ln = DOMNodePointer.getLocalName(node);
> String nsURI = getNamespaceURI();
> if (nsURI == null) {
> buffer.append(ln);
> buffer.append('[');
> 
> buffer.append(getRelativePositionByName()).append(']');
> }
> else {
> String prefix = 
> getNamespaceResolver().getPrefix(nsURI);
> if (prefix != null) {
> ...
> {code}
> should become
> {code}
> ...
> String ln = DOMNodePointer.getLocalName(node);
> String nsURI = getNamespaceURI();
> if (nsURI == null || nsURI.length() == 0) { // check for 
> empty string which means that the node doesn't have a namespace.
> buffer.append(ln);
> buffer.append('[');
> 
> buffer.append(getRelativePositionByName()).append(']');
> }
> else {
> String prefix = 
> getNamespaceResolver().getPrefix(nsURI);
> if (prefix != null) {
> ...
> {code}

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[jira] [Updated] (COMPRESS-171) createArchiveInputStream detects text files less than 100 bytes as tar archives

2012-01-20 Thread Daniel Lowe (Updated) (JIRA)

 [ 
https://issues.apache.org/jira/browse/COMPRESS-171?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Daniel Lowe updated COMPRESS-171:
-

Fix Version/s: (was: 1.1)
   1.4

> createArchiveInputStream detects text files less than 100 bytes as tar 
> archives
> ---
>
> Key: COMPRESS-171
> URL: https://issues.apache.org/jira/browse/COMPRESS-171
> Project: Commons Compress
>  Issue Type: Bug
>  Components: Archivers
>Affects Versions: 1.2, 1.3
> Environment: Windows 7/JDK 1.6
>Reporter: Daniel Lowe
>  Labels: detection, tar
> Fix For: 1.4
>
>   Original Estimate: 1h
>  Remaining Estimate: 1h
>
> The fix for COMPRESS-117 which modified 
> ArchiveStreamFactory().createArchiveInputStream(inputstream) results in short 
> text files (empirically seems to be those <= 100 bytes) being detected as tar 
> archives which obviously is not desirable if one wants to know whether or not 
> the files are archives.
> I'm not an expert on compressed archives but perhaps the heuristic that if a 
> stream is interpretable as a tar file without an exception being thrown 
> should only be applied on archives greater than 100 bytes?

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[jira] [Created] (COMPRESS-171) createArchiveInputStream detects text files less than 100 bytes as tar archives

2012-01-20 Thread Daniel Lowe (Created) (JIRA)
createArchiveInputStream detects text files less than 100 bytes as tar archives
---

 Key: COMPRESS-171
 URL: https://issues.apache.org/jira/browse/COMPRESS-171
 Project: Commons Compress
  Issue Type: Bug
  Components: Archivers
Affects Versions: 1.3, 1.2
 Environment: Windows 7/JDK 1.6
Reporter: Daniel Lowe
 Fix For: 1.1


The fix for COMPRESS-117 which modified 
ArchiveStreamFactory().createArchiveInputStream(inputstream) results in short 
text files (empirically seems to be those <= 100 bytes) being detected as tar 
archives which obviously is not desirable if one wants to know whether or not 
the files are archives.
I'm not an expert on compressed archives but perhaps the heuristic that if a 
stream is interpretable as a tar file without an exception being thrown should 
only be applied on archives greater than 100 bytes?

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[jira] [Commented] (SANDBOX-359) Move License Agreement to file top

2012-01-20 Thread Benedikt Ritter (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-359?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189930#comment-13189930
 ] 

Benedikt Ritter commented on SANDBOX-359:
-

Okay, I just looked through trunk of lang3 and collections and saw that they 
have it at the very top. It's just, what I have seen the most.

> Move License Agreement to file top
> --
>
> Key: SANDBOX-359
> URL: https://issues.apache.org/jira/browse/SANDBOX-359
> Project: Commons Sandbox
>  Issue Type: Task
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
>Priority: Trivial
>
> Currently, license agreements are located between package declaration and 
> import statements. To stick to conventions, the license agreements should be 
> moved up to the very top of each file.

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[jira] [Commented] (SANDBOX-360) Rename Converter to Transformer

2012-01-20 Thread Benedikt Ritter (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-360?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189919#comment-13189919
 ] 

Benedikt Ritter commented on SANDBOX-360:
-

As I mentioned on the mailing list, to me it seems, that concepts like 
Transformer, Predicate, Closure, etc. are missing in Java, giving the fact that 
for example commons collections and guava define nearly the same interfaces. 
Adding another label for something that basically transforms an object of one 
type into another an object of another type, does not seem to be the best thing 
to do. I would rather call it a transformer, like other libraries do and hope 
to see a JSR one day to get rid of it ;-)

I agree with you, that having the same interface defined in two projects is bad 
also. But I guess that is the price of having no dependencies. Maybe it would 
make sense to have a very minimal _commons essentials_ or _commons basics_ that 
has stuff like that in it. Some sort of base that really all projects share. 
Validation of input parameters is another thing that every project has to 
implement. 
But I think I'm drifting away... ;-)

> Rename Converter to Transformer
> ---
>
> Key: SANDBOX-360
> URL: https://issues.apache.org/jira/browse/SANDBOX-360
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
>Priority: Minor
>
> Since org.apache.commons.beanutils2.Converter is essentially a from of a 
> Transformer (see org.apache.commons.collections.Transformer), it should be 
> named this way. The same applies for 
> org.apache.commons.beanutils2.converters.AbstractConverter.

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[jira] [Updated] (SANDBOX-358) Early return/termination for graph visit

2012-01-20 Thread Claudio Squarcella (Updated) (JIRA)

 [ 
https://issues.apache.org/jira/browse/SANDBOX-358?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Claudio Squarcella updated SANDBOX-358:
---

Attachment: EarlyTerminationAndSubgraphSkipForSearchAlgorithms.patch

Hi,

so I actually changed signatures for methods in {{GraphVisitHandler}}:
* {{discoverVertex}} and {{discoverEdge}} now tell the algorithm if the 
corresponding {{Vertex}} and {{Edge}} should be expanded (i.e. if their 
neighbors should be added to the visit queue);
* {{finishVertex}} and {{finishEdge}} tell if the algorithm can be ended 
prematurely (because the search is complete, e.g. before the target element was 
found).

All tests still work. I hope you guys like this one :)
Claudio

> Early return/termination for graph visit
> 
>
> Key: SANDBOX-358
> URL: https://issues.apache.org/jira/browse/SANDBOX-358
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: Graph
>Reporter: Claudio Squarcella
>Priority: Minor
>  Labels: graph, visit, visithandler
> Attachments: EarlyTerminationAndSubgraphSkipForSearchAlgorithms.patch
>
>   Original Estimate: 72h
>  Remaining Estimate: 72h
>
> Hello,
> the current implementations in the class {{Visit}} (package 
> {{org.apache.commons.graph.visit}}) do not include the possibility to stop 
> the search prematurely. That would be more natural (and faster) for many 
> kinds of search, e.g. when looking for the first occurrence of a specific 
> pattern (vertex, path with certain features, etc).
> The easiest solution: changing all method signatures in {{GraphVisitHandler}} 
> from {{void}} to {{boolean}}, forcing the handler to answer the question: 
> _should I continue?_ 
> I understand semantics get a bit entangled (well, not with an appropriate 
> documentation!), so I am open to more verbose options: e.g. a method 
> {{isSearchComplete}} to call after every step... but that would only be more 
> verbose, wouldn't it?
> Waiting for feedback and ready to patch :-)
> Claudio

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[jira] [Commented] (SANDBOX-360) Rename Converter to Transformer

2012-01-20 Thread Matt Benson (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-360?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189901#comment-13189901
 ] 

Matt Benson commented on SANDBOX-360:
-

The [collections] functors are all but deprecated; I wouldn't necessarily base 
other classes' names on theirs.  I would argue that in a full-blown 
transformation framework e.g. Morph, "transformer" is a generalization of 
"converter" and "copier".  My WIP object transformation library (which might 
become Morph 2) uses this type of nomenclature as well.

> Rename Converter to Transformer
> ---
>
> Key: SANDBOX-360
> URL: https://issues.apache.org/jira/browse/SANDBOX-360
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
>Priority: Minor
>
> Since org.apache.commons.beanutils2.Converter is essentially a from of a 
> Transformer (see org.apache.commons.collections.Transformer), it should be 
> named this way. The same applies for 
> org.apache.commons.beanutils2.converters.AbstractConverter.

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[jira] [Commented] (SANDBOX-360) Rename Converter to Transformer

2012-01-20 Thread Simone Tripodi (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-360?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189894#comment-13189894
 ] 

Simone Tripodi commented on SANDBOX-360:


I agree and like it, I was using the {{Converter}} keyword just because in the 
old API was named in that way :P

Just the time to leave the office and once get back home, will be done :)
Thanks!

> Rename Converter to Transformer
> ---
>
> Key: SANDBOX-360
> URL: https://issues.apache.org/jira/browse/SANDBOX-360
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
>Priority: Minor
>
> Since org.apache.commons.beanutils2.Converter is essentially a from of a 
> Transformer (see org.apache.commons.collections.Transformer), it should be 
> named this way. The same applies for 
> org.apache.commons.beanutils2.converters.AbstractConverter.

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[jira] [Commented] (SANDBOX-359) Move License Agreement to file top

2012-01-20 Thread Simone Tripodi (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-359?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189893#comment-13189893
 ] 

Simone Tripodi commented on SANDBOX-359:


which convention? the code follows the Maven code style format (see checkstyle 
configuration) wich allows the license header in the place that is already :)

> Move License Agreement to file top
> --
>
> Key: SANDBOX-359
> URL: https://issues.apache.org/jira/browse/SANDBOX-359
> Project: Commons Sandbox
>  Issue Type: Task
>  Components: BeanUtils2
>Affects Versions: Nightly Builds
>Reporter: Benedikt Ritter
>Priority: Trivial
>
> Currently, license agreements are located between package declaration and 
> import statements. To stick to conventions, the license agreements should be 
> moved up to the very top of each file.

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[jira] [Resolved] (SANDBOX-361) Add fluent APIs to build mutable Graphes

2012-01-20 Thread Simone Tripodi (Resolved) (JIRA)

 [ 
https://issues.apache.org/jira/browse/SANDBOX-361?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Simone Tripodi resolved SANDBOX-361.


Resolution: Fixed

fixed, see 
[r1233995|https://svn.apache.org/viewvc?view=revision&revision=1233995]

> Add fluent APIs to build mutable Graphes
> 
>
> Key: SANDBOX-361
> URL: https://issues.apache.org/jira/browse/SANDBOX-361
> Project: Commons Sandbox
>  Issue Type: New Feature
>  Components: Graph
>Reporter: Simone Tripodi
>Assignee: Simone Tripodi
>
> Actual MutableGraph APIs are really *verbose*, using a configuration/builder 
> pattern "a la google Guice" it is possible to improve the MutableGraph code.
> That doesn't involve any modification, just additions.

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[jira] [Created] (SANDBOX-361) Add fluent APIs to build mutable Graphes

2012-01-20 Thread Simone Tripodi (Created) (JIRA)
Add fluent APIs to build mutable Graphes


 Key: SANDBOX-361
 URL: https://issues.apache.org/jira/browse/SANDBOX-361
 Project: Commons Sandbox
  Issue Type: New Feature
  Components: Graph
Reporter: Simone Tripodi
Assignee: Simone Tripodi


Actual MutableGraph APIs are really *verbose*, using a configuration/builder 
pattern "a la google Guice" it is possible to improve the MutableGraph code.
That doesn't involve any modification, just additions.

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[jira] [Created] (SANDBOX-360) Rename Converter to Transformer

2012-01-20 Thread Benedikt Ritter (Created) (JIRA)
Rename Converter to Transformer
---

 Key: SANDBOX-360
 URL: https://issues.apache.org/jira/browse/SANDBOX-360
 Project: Commons Sandbox
  Issue Type: Improvement
  Components: BeanUtils2
Affects Versions: Nightly Builds
Reporter: Benedikt Ritter
Priority: Minor


Since org.apache.commons.beanutils2.Converter is essentially a from of a 
Transformer (see org.apache.commons.collections.Transformer), it should be 
named this way. The same applies for 
org.apache.commons.beanutils2.converters.AbstractConverter.


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[jira] [Created] (SANDBOX-359) Move License Agreement to file top

2012-01-20 Thread Benedikt Ritter (Created) (JIRA)
Move License Agreement to file top
--

 Key: SANDBOX-359
 URL: https://issues.apache.org/jira/browse/SANDBOX-359
 Project: Commons Sandbox
  Issue Type: Task
  Components: BeanUtils2
Affects Versions: Nightly Builds
Reporter: Benedikt Ritter
Priority: Trivial


Currently, license agreements are located between package declaration and 
import statements. To stick to conventions, the license agreements should be 
moved up to the very top of each file.

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[jira] [Commented] (MATH-725) use initialized static final arrays, instead of initializing it in constructors

2012-01-20 Thread Gilles (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/MATH-725?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189872#comment-13189872
 ] 

Gilles commented on MATH-725:
-

Fine then.

Eldar,
Would you provide a patch along those lines ("static" initializations + getter 
methods)?
Thanks.


> use initialized static final arrays, instead of initializing it in 
> constructors
> ---
>
> Key: MATH-725
> URL: https://issues.apache.org/jira/browse/MATH-725
> Project: Commons Math
>  Issue Type: Improvement
>Affects Versions: 2.2
>Reporter: Eldar Agalarov
>Priority: Minor
>   Original Estimate: 1h
>  Remaining Estimate: 1h
>
> The Well PRNG's implementations have arrays iRm1, iRm2, iRm3, i1, i2, i3. All 
> these arrays are unmodifiable, so we can replace this arrays initialization 
> block
> final int w = 32;
>   final int r = (k + w - 1) / w;
>   this.v = new int[r];
>   this.index = 0;
>   
>   // precompute indirection index tables. These tables are used for 
> optimizing access
>   // they allow saving computations like "(j + r - 2) % r" with costly 
> modulo operations
>   iRm1 = new int[r];
>   iRm2 = new int[r];
>   i1 = new int[r];
>   i2 = new int[r];
>   i3 = new int[r];
>   for (int j = 0; j < r; ++j) {
>   iRm1[j] = (j + r - 1) % r;
>   iRm2[j] = (j + r - 2) % r;
>   i1[j] = (j + m1) % r;
>   i2[j] = (j + m2) % r;
>   i3[j] = (j + m3) % r;
>   }
> with inline initialized static final arrays.
> This is much better and faster implementation, freed from unnecessary costly 
> calculations (such as %).
> Another solution: leave as is, but make all these arrays static.

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[jira] [Resolved] (IO-301) Add IOUtils.closeQuietly(Selector)

2012-01-20 Thread Gary D. Gregory (Resolved) (JIRA)

 [ 
https://issues.apache.org/jira/browse/IO-301?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Gary D. Gregory resolved IO-301.


Resolution: Fixed

Patch applied, thank you. Also added a test to get test code coverage to 100% 
for the new method.

> Add IOUtils.closeQuietly(Selector)
> --
>
> Key: IO-301
> URL: https://issues.apache.org/jira/browse/IO-301
> Project: Commons IO
>  Issue Type: Improvement
>  Components: Utilities
>Affects Versions: 2.1
>Reporter: Karthik K
> Fix For: 2.2
>
> Attachments: IO-301.patch
>
>
> IOUtils.closeQuietly(Selector) would be useful to fix yet another resource 
> leakage.

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[jira] [Updated] (IO-301) Add IOUtils.closeQuietly(Selector)

2012-01-20 Thread Gary D. Gregory (Updated) (JIRA)

 [ 
https://issues.apache.org/jira/browse/IO-301?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Gary D. Gregory updated IO-301:
---

Summary: Add IOUtils.closeQuietly(Selector)  (was: commons-io:  
IOUtils.closeQuietly(Selector) necessary )

> Add IOUtils.closeQuietly(Selector)
> --
>
> Key: IO-301
> URL: https://issues.apache.org/jira/browse/IO-301
> Project: Commons IO
>  Issue Type: Improvement
>  Components: Utilities
>Affects Versions: 2.1
>Reporter: Karthik K
> Fix For: 2.2
>
> Attachments: IO-301.patch
>
>
> IOUtils.closeQuietly(Selector) would be useful to fix yet another resource 
> leakage.

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[jira] [Commented] (MATH-725) use initialized static final arrays, instead of initializing it in constructors

2012-01-20 Thread Sebb (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/MATH-725?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189862#comment-13189862
 ] 

Sebb commented on MATH-725:
---

AFAIK, getters will be inlined by optimising compilers. 
So they won't be noticeably slower than direct access.

> use initialized static final arrays, instead of initializing it in 
> constructors
> ---
>
> Key: MATH-725
> URL: https://issues.apache.org/jira/browse/MATH-725
> Project: Commons Math
>  Issue Type: Improvement
>Affects Versions: 2.2
>Reporter: Eldar Agalarov
>Priority: Minor
>   Original Estimate: 1h
>  Remaining Estimate: 1h
>
> The Well PRNG's implementations have arrays iRm1, iRm2, iRm3, i1, i2, i3. All 
> these arrays are unmodifiable, so we can replace this arrays initialization 
> block
> final int w = 32;
>   final int r = (k + w - 1) / w;
>   this.v = new int[r];
>   this.index = 0;
>   
>   // precompute indirection index tables. These tables are used for 
> optimizing access
>   // they allow saving computations like "(j + r - 2) % r" with costly 
> modulo operations
>   iRm1 = new int[r];
>   iRm2 = new int[r];
>   i1 = new int[r];
>   i2 = new int[r];
>   i3 = new int[r];
>   for (int j = 0; j < r; ++j) {
>   iRm1[j] = (j + r - 1) % r;
>   iRm2[j] = (j + r - 2) % r;
>   i1[j] = (j + m1) % r;
>   i2[j] = (j + m2) % r;
>   i3[j] = (j + m3) % r;
>   }
> with inline initialized static final arrays.
> This is much better and faster implementation, freed from unnecessary costly 
> calculations (such as %).
> Another solution: leave as is, but make all these arrays static.

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[jira] [Commented] (MATH-725) use initialized static final arrays, instead of initializing it in constructors

2012-01-20 Thread Gilles (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/MATH-725?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189860#comment-13189860
 ] 

Gilles commented on MATH-725:
-

The problem is that arrays are _mutable_. If they are made "static", a buggy or 
malicious subclass of {{AbstractWell}} will be able to affect all instances.

We could do that if the arrays are never exposed, i.e. they would become 
"private" and their contents must be accessed through methods. Not sure whether 
it won't be slower in the end...



> use initialized static final arrays, instead of initializing it in 
> constructors
> ---
>
> Key: MATH-725
> URL: https://issues.apache.org/jira/browse/MATH-725
> Project: Commons Math
>  Issue Type: Improvement
>Affects Versions: 2.2
>Reporter: Eldar Agalarov
>Priority: Minor
>   Original Estimate: 1h
>  Remaining Estimate: 1h
>
> The Well PRNG's implementations have arrays iRm1, iRm2, iRm3, i1, i2, i3. All 
> these arrays are unmodifiable, so we can replace this arrays initialization 
> block
> final int w = 32;
>   final int r = (k + w - 1) / w;
>   this.v = new int[r];
>   this.index = 0;
>   
>   // precompute indirection index tables. These tables are used for 
> optimizing access
>   // they allow saving computations like "(j + r - 2) % r" with costly 
> modulo operations
>   iRm1 = new int[r];
>   iRm2 = new int[r];
>   i1 = new int[r];
>   i2 = new int[r];
>   i3 = new int[r];
>   for (int j = 0; j < r; ++j) {
>   iRm1[j] = (j + r - 1) % r;
>   iRm2[j] = (j + r - 2) % r;
>   i1[j] = (j + m1) % r;
>   i2[j] = (j + m2) % r;
>   i3[j] = (j + m3) % r;
>   }
> with inline initialized static final arrays.
> This is much better and faster implementation, freed from unnecessary costly 
> calculations (such as %).
> Another solution: leave as is, but make all these arrays static.

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[jira] [Commented] (DAEMON-235) When running java application via procrun (in jvm mode) an RMI thread triggers an EXCEPTION_ACCESS_VIOLATION

2012-01-20 Thread J-L (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/DAEMON-235?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189804#comment-13189804
 ] 

J-L commented on DAEMON-235:


Well, yes I have. But I'm trying to get these people as much information as 
possible.
I don't think asking this in the place where the only different component is 
made is that crazy. Currently it is powered by something that runs a service 
from a .bat file. As far I can tell that works.
Understanding how the procrun process differs from a standard Java process is 
quite interesting information. Might also help clarify why Win 7 and XP act 
differently.

I just would like to get this to work, otherwise moving to procrun could be 
undermined altogether. :(



> When running java application via procrun (in jvm mode) an RMI thread 
> triggers an EXCEPTION_ACCESS_VIOLATION
> 
>
> Key: DAEMON-235
> URL: https://issues.apache.org/jira/browse/DAEMON-235
> Project: Commons Daemon
>  Issue Type: Bug
>  Components: Procrun
>Affects Versions: 1.0.5, 1.0.6, 1.0.7, 1.0.8
> Environment: Windows XP SP3 and Win 7 SP1 x64
> JDK 1.6.0_30 Server VM (same for client) 32 bit
>Reporter: J-L
>
> When running java application via procrun (in jvm mode) an RMI thread 
> triggers an EXCEPTION_ACCESS_VIOLATION
> It happens with both with a series of VM tweaking options and no options at 
> all.
> Using the same options executing from a bat file (with java.exe) does not 
> crash.
> The crashing application is hosting an RMI registry at the moment of the 
> crash. An rmi call to the application is probably triggering the crash.
> Adding an example hs_err_pid file. (Note: the java_home pointing elsewhere 
> doesn't effect the result).
> {code:none}
> #
> # A fatal error has been detected by the Java Runtime Environment:
> #
> #  EXCEPTION_ACCESS_VIOLATION (0xc005) at pc=0x7824f786, pid=5876, 
> tid=3656
> #
> # JRE version: 6.0_30-b12
> # Java VM: Java HotSpot(TM) Server VM (20.5-b03 mixed mode windows-x86 )
> # Problematic frame:
> # C  [MFC80.DLL+0x7f786]
> #
> # If you would like to submit a bug report, please visit:
> #   http://java.sun.com/webapps/bugreport/crash.jsp
> # The crash happened outside the Java Virtual Machine in native code.
> # See problematic frame for where to report the bug.
> #
> ---  T H R E A D  ---
> Current thread (0x20206c00):  JavaThread "RMI TCP 
> Connection(2)-192.168.56.101" daemon [_thread_in_native, id=3656, 
> stack(0x20ba,0x20c1)]
> siginfo: ExceptionCode=0xc005, reading address 0x21301e90
> Registers:
> EAX=0x21301e74, EBX=0x22f83170, ECX=0x22f83170, EDX=0x
> ESP=0x20c0f0c8, EBP=0x20c0f154, ESI=0x20c0f1c4, EDI=0x0004
> EIP=0x7824f786, EFLAGS=0x00010202
> Top of Stack: (sp=0x20c0f0c8)
> 0x20c0f0c8:   0002 d8a81ade 0004 20c0f1d4
> 0x20c0f0d8:      
> 0x20c0f0e8:    20c0f110 206a 
> 0x20c0f0f8:   00139f28   
> 0x20c0f108:   0001 0027 20c0f06c 7712556e
> 0x20c0f118:   20c0f158 7c90e920 7c910060 
> 0x20c0f128:   7c91005d 204cf1b7 206a 
> 0x20c0f138:   22f83170 d92a86cf 0004 20c0f0cc 
> Instructions: (pc=0x7824f786)
> 0x7824f766:   78 ff 75 10 e8 70 98 fa ff 85 c0 59 59 75 0a b8
> 0x7824f776:   01 00 02 80 e9 39 04 00 00 ff 75 0c 8b 03 8b cb
> 0x7824f786:   ff 50 1c 85 c0 75 0a b8 ff ff 00 80 e9 21 04 00
> 0x7824f796:   00 8d 7d c8 a5 a5 a5 a5 33 ff 39 7d d4 74 18 83 
> Register to memory mapping:
> EAX=0x21301e74 is an unknown value
> EBX=0x22f83170 is an unknown value
> ECX=0x22f83170 is an unknown value
> EDX=0x is an unknown value
> ESP=0x20c0f0c8 is pointing into the stack for thread: 0x20206c00
> EBP=0x20c0f154 is pointing into the stack for thread: 0x20206c00
> ESI=0x20c0f1c4 is pointing into the stack for thread: 0x20206c00
> EDI=0x0004 is an unknown value
> Stack: [0x20ba,0x20c1],  sp=0x20c0f0c8,  free space=444k
> Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native 
> code)
> C  [MFC80.DLL+0x7f786]  Ordinal3901+0x58
> C  [cadxwrapper.dll+0x4e90]
> C  [cadxwrapper.dll+0x519c]
> C  [cadxwrapper.dll+0x133b]  
> Java_com_esko_webcenter_cadxserver_CadXJNIImpl_OpenDesign+0x3b
> j  
> com.esko.webcenter.cadxserver.CadXServer.generateThumbnail(Ljava/lang/String;Ljava/lang/String;)V+21
> v  ~StubRoutines::call_stub
> V  [jvm.dll+0x10e3bd]
> V  [jvm.dll+0x1a5711]
> V  [jvm.dll+0x10e44d]
> V  [jvm.dll+0x1185d3]
> V  [jvm.dll+0x118f16]
> V  [jvm.dll+0xc22ae]
> C  [java.dll+0x7225]  Java_sun_reflect_NativeMethodAccessorImpl_invoke0+0x15
> j  
> sun.reflect.NativeMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+87
> j  
> sun.reflec

[jira] [Updated] (MATH-729) Add an implementation for Holt-Winters triple exponential smoothing

2012-01-20 Thread Gilles (Updated) (JIRA)

 [ 
https://issues.apache.org/jira/browse/MATH-729?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Gilles updated MATH-729:


Affects Version/s: (was: 3.1)
Fix Version/s: 3.1

> Add an implementation for Holt-Winters triple exponential smoothing
> ---
>
> Key: MATH-729
> URL: https://issues.apache.org/jira/browse/MATH-729
> Project: Commons Math
>  Issue Type: New Feature
>Reporter: Nishant Chandra
>  Labels: exponential, smoothing, triple
> Fix For: 3.1
>
>
> Add an implementation for Holt-Winters triple exponential smoothing

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[jira] [Commented] (DAEMON-235) When running java application via procrun (in jvm mode) an RMI thread triggers an EXCEPTION_ACCESS_VIOLATION

2012-01-20 Thread Sebb (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/DAEMON-235?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189755#comment-13189755
 ] 

Sebb commented on DAEMON-235:
-

Have you tried showing the C++ developers the stack trace?

Should be enough to give a clue as to the cause.


> When running java application via procrun (in jvm mode) an RMI thread 
> triggers an EXCEPTION_ACCESS_VIOLATION
> 
>
> Key: DAEMON-235
> URL: https://issues.apache.org/jira/browse/DAEMON-235
> Project: Commons Daemon
>  Issue Type: Bug
>  Components: Procrun
>Affects Versions: 1.0.5, 1.0.6, 1.0.7, 1.0.8
> Environment: Windows XP SP3 and Win 7 SP1 x64
> JDK 1.6.0_30 Server VM (same for client) 32 bit
>Reporter: J-L
>
> When running java application via procrun (in jvm mode) an RMI thread 
> triggers an EXCEPTION_ACCESS_VIOLATION
> It happens with both with a series of VM tweaking options and no options at 
> all.
> Using the same options executing from a bat file (with java.exe) does not 
> crash.
> The crashing application is hosting an RMI registry at the moment of the 
> crash. An rmi call to the application is probably triggering the crash.
> Adding an example hs_err_pid file. (Note: the java_home pointing elsewhere 
> doesn't effect the result).
> {code:none}
> #
> # A fatal error has been detected by the Java Runtime Environment:
> #
> #  EXCEPTION_ACCESS_VIOLATION (0xc005) at pc=0x7824f786, pid=5876, 
> tid=3656
> #
> # JRE version: 6.0_30-b12
> # Java VM: Java HotSpot(TM) Server VM (20.5-b03 mixed mode windows-x86 )
> # Problematic frame:
> # C  [MFC80.DLL+0x7f786]
> #
> # If you would like to submit a bug report, please visit:
> #   http://java.sun.com/webapps/bugreport/crash.jsp
> # The crash happened outside the Java Virtual Machine in native code.
> # See problematic frame for where to report the bug.
> #
> ---  T H R E A D  ---
> Current thread (0x20206c00):  JavaThread "RMI TCP 
> Connection(2)-192.168.56.101" daemon [_thread_in_native, id=3656, 
> stack(0x20ba,0x20c1)]
> siginfo: ExceptionCode=0xc005, reading address 0x21301e90
> Registers:
> EAX=0x21301e74, EBX=0x22f83170, ECX=0x22f83170, EDX=0x
> ESP=0x20c0f0c8, EBP=0x20c0f154, ESI=0x20c0f1c4, EDI=0x0004
> EIP=0x7824f786, EFLAGS=0x00010202
> Top of Stack: (sp=0x20c0f0c8)
> 0x20c0f0c8:   0002 d8a81ade 0004 20c0f1d4
> 0x20c0f0d8:      
> 0x20c0f0e8:    20c0f110 206a 
> 0x20c0f0f8:   00139f28   
> 0x20c0f108:   0001 0027 20c0f06c 7712556e
> 0x20c0f118:   20c0f158 7c90e920 7c910060 
> 0x20c0f128:   7c91005d 204cf1b7 206a 
> 0x20c0f138:   22f83170 d92a86cf 0004 20c0f0cc 
> Instructions: (pc=0x7824f786)
> 0x7824f766:   78 ff 75 10 e8 70 98 fa ff 85 c0 59 59 75 0a b8
> 0x7824f776:   01 00 02 80 e9 39 04 00 00 ff 75 0c 8b 03 8b cb
> 0x7824f786:   ff 50 1c 85 c0 75 0a b8 ff ff 00 80 e9 21 04 00
> 0x7824f796:   00 8d 7d c8 a5 a5 a5 a5 33 ff 39 7d d4 74 18 83 
> Register to memory mapping:
> EAX=0x21301e74 is an unknown value
> EBX=0x22f83170 is an unknown value
> ECX=0x22f83170 is an unknown value
> EDX=0x is an unknown value
> ESP=0x20c0f0c8 is pointing into the stack for thread: 0x20206c00
> EBP=0x20c0f154 is pointing into the stack for thread: 0x20206c00
> ESI=0x20c0f1c4 is pointing into the stack for thread: 0x20206c00
> EDI=0x0004 is an unknown value
> Stack: [0x20ba,0x20c1],  sp=0x20c0f0c8,  free space=444k
> Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native 
> code)
> C  [MFC80.DLL+0x7f786]  Ordinal3901+0x58
> C  [cadxwrapper.dll+0x4e90]
> C  [cadxwrapper.dll+0x519c]
> C  [cadxwrapper.dll+0x133b]  
> Java_com_esko_webcenter_cadxserver_CadXJNIImpl_OpenDesign+0x3b
> j  
> com.esko.webcenter.cadxserver.CadXServer.generateThumbnail(Ljava/lang/String;Ljava/lang/String;)V+21
> v  ~StubRoutines::call_stub
> V  [jvm.dll+0x10e3bd]
> V  [jvm.dll+0x1a5711]
> V  [jvm.dll+0x10e44d]
> V  [jvm.dll+0x1185d3]
> V  [jvm.dll+0x118f16]
> V  [jvm.dll+0xc22ae]
> C  [java.dll+0x7225]  Java_sun_reflect_NativeMethodAccessorImpl_invoke0+0x15
> j  
> sun.reflect.NativeMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+87
> j  
> sun.reflect.DelegatingMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+6
> j  
> java.lang.reflect.Method.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+161
> j  
> sun.rmi.server.UnicastServerRef.dispatch(Ljava/rmi/Remote;Ljava/rmi/server/RemoteCall;)V+242
> j  sun.rmi.transport.Transport$1.run()Ljava/lang/Object;+23
> v  ~StubRoutines::call_stub
> V  [jvm.dll+0x10e3bd]
> V  [jvm.dll+0x1a5711]
> V  [jvm.dll+0

[jira] [Commented] (DAEMON-235) When running java application via procrun (in jvm mode) an RMI thread triggers an EXCEPTION_ACCESS_VIOLATION

2012-01-20 Thread J-L (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/DAEMON-235?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189688#comment-13189688
 ] 

J-L commented on DAEMON-235:


I do expect the JNI called code has something to do with it.
So far JBoss and Tomcat are spinning with procrun, and they communicate over 
RMI.

Could you shed some light on what these 'security settings' are and how they 
would differ between Win XP an Win 7. The ideal would be that I can get XP to 
behave the same way as Win 7. But in either case, something to communicate back 
to the developer of the C++ code would be interesting.


> When running java application via procrun (in jvm mode) an RMI thread 
> triggers an EXCEPTION_ACCESS_VIOLATION
> 
>
> Key: DAEMON-235
> URL: https://issues.apache.org/jira/browse/DAEMON-235
> Project: Commons Daemon
>  Issue Type: Bug
>  Components: Procrun
>Affects Versions: 1.0.5, 1.0.6, 1.0.7, 1.0.8
> Environment: Windows XP SP3 and Win 7 SP1 x64
> JDK 1.6.0_30 Server VM (same for client) 32 bit
>Reporter: J-L
>
> When running java application via procrun (in jvm mode) an RMI thread 
> triggers an EXCEPTION_ACCESS_VIOLATION
> It happens with both with a series of VM tweaking options and no options at 
> all.
> Using the same options executing from a bat file (with java.exe) does not 
> crash.
> The crashing application is hosting an RMI registry at the moment of the 
> crash. An rmi call to the application is probably triggering the crash.
> Adding an example hs_err_pid file. (Note: the java_home pointing elsewhere 
> doesn't effect the result).
> {code:none}
> #
> # A fatal error has been detected by the Java Runtime Environment:
> #
> #  EXCEPTION_ACCESS_VIOLATION (0xc005) at pc=0x7824f786, pid=5876, 
> tid=3656
> #
> # JRE version: 6.0_30-b12
> # Java VM: Java HotSpot(TM) Server VM (20.5-b03 mixed mode windows-x86 )
> # Problematic frame:
> # C  [MFC80.DLL+0x7f786]
> #
> # If you would like to submit a bug report, please visit:
> #   http://java.sun.com/webapps/bugreport/crash.jsp
> # The crash happened outside the Java Virtual Machine in native code.
> # See problematic frame for where to report the bug.
> #
> ---  T H R E A D  ---
> Current thread (0x20206c00):  JavaThread "RMI TCP 
> Connection(2)-192.168.56.101" daemon [_thread_in_native, id=3656, 
> stack(0x20ba,0x20c1)]
> siginfo: ExceptionCode=0xc005, reading address 0x21301e90
> Registers:
> EAX=0x21301e74, EBX=0x22f83170, ECX=0x22f83170, EDX=0x
> ESP=0x20c0f0c8, EBP=0x20c0f154, ESI=0x20c0f1c4, EDI=0x0004
> EIP=0x7824f786, EFLAGS=0x00010202
> Top of Stack: (sp=0x20c0f0c8)
> 0x20c0f0c8:   0002 d8a81ade 0004 20c0f1d4
> 0x20c0f0d8:      
> 0x20c0f0e8:    20c0f110 206a 
> 0x20c0f0f8:   00139f28   
> 0x20c0f108:   0001 0027 20c0f06c 7712556e
> 0x20c0f118:   20c0f158 7c90e920 7c910060 
> 0x20c0f128:   7c91005d 204cf1b7 206a 
> 0x20c0f138:   22f83170 d92a86cf 0004 20c0f0cc 
> Instructions: (pc=0x7824f786)
> 0x7824f766:   78 ff 75 10 e8 70 98 fa ff 85 c0 59 59 75 0a b8
> 0x7824f776:   01 00 02 80 e9 39 04 00 00 ff 75 0c 8b 03 8b cb
> 0x7824f786:   ff 50 1c 85 c0 75 0a b8 ff ff 00 80 e9 21 04 00
> 0x7824f796:   00 8d 7d c8 a5 a5 a5 a5 33 ff 39 7d d4 74 18 83 
> Register to memory mapping:
> EAX=0x21301e74 is an unknown value
> EBX=0x22f83170 is an unknown value
> ECX=0x22f83170 is an unknown value
> EDX=0x is an unknown value
> ESP=0x20c0f0c8 is pointing into the stack for thread: 0x20206c00
> EBP=0x20c0f154 is pointing into the stack for thread: 0x20206c00
> ESI=0x20c0f1c4 is pointing into the stack for thread: 0x20206c00
> EDI=0x0004 is an unknown value
> Stack: [0x20ba,0x20c1],  sp=0x20c0f0c8,  free space=444k
> Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native 
> code)
> C  [MFC80.DLL+0x7f786]  Ordinal3901+0x58
> C  [cadxwrapper.dll+0x4e90]
> C  [cadxwrapper.dll+0x519c]
> C  [cadxwrapper.dll+0x133b]  
> Java_com_esko_webcenter_cadxserver_CadXJNIImpl_OpenDesign+0x3b
> j  
> com.esko.webcenter.cadxserver.CadXServer.generateThumbnail(Ljava/lang/String;Ljava/lang/String;)V+21
> v  ~StubRoutines::call_stub
> V  [jvm.dll+0x10e3bd]
> V  [jvm.dll+0x1a5711]
> V  [jvm.dll+0x10e44d]
> V  [jvm.dll+0x1185d3]
> V  [jvm.dll+0x118f16]
> V  [jvm.dll+0xc22ae]
> C  [java.dll+0x7225]  Java_sun_reflect_NativeMethodAccessorImpl_invoke0+0x15
> j  
> sun.reflect.NativeMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+87
> j  
> sun.reflect.DelegatingMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+6
> j  
> java.lang.reflect.Meth

[jira] [Commented] (SANDBOX-358) Early return/termination for graph visit

2012-01-20 Thread Simone Tripodi (Commented) (JIRA)

[ 
https://issues.apache.org/jira/browse/SANDBOX-358?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13189681#comment-13189681
 ] 

Simone Tripodi commented on SANDBOX-358:


Ciao Claudio!

go ahead on changing all method signatures in {{GraphVisitHandler}} from 
{{void}} to {{boolean}}, this is the cleaner solution I can see ATM.

Thanks in advance!!!

> Early return/termination for graph visit
> 
>
> Key: SANDBOX-358
> URL: https://issues.apache.org/jira/browse/SANDBOX-358
> Project: Commons Sandbox
>  Issue Type: Improvement
>  Components: Graph
>Reporter: Claudio Squarcella
>Priority: Minor
>  Labels: graph, visit, visithandler
>   Original Estimate: 72h
>  Remaining Estimate: 72h
>
> Hello,
> the current implementations in the class {{Visit}} (package 
> {{org.apache.commons.graph.visit}}) do not include the possibility to stop 
> the search prematurely. That would be more natural (and faster) for many 
> kinds of search, e.g. when looking for the first occurrence of a specific 
> pattern (vertex, path with certain features, etc).
> The easiest solution: changing all method signatures in {{GraphVisitHandler}} 
> from {{void}} to {{boolean}}, forcing the handler to answer the question: 
> _should I continue?_ 
> I understand semantics get a bit entangled (well, not with an appropriate 
> documentation!), so I am open to more verbose options: e.g. a method 
> {{isSearchComplete}} to call after every step... but that would only be more 
> verbose, wouldn't it?
> Waiting for feedback and ready to patch :-)
> Claudio

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