[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-13 Thread Hudson (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16578662#comment-16578662
 ] 

Hudson commented on HBASE-21029:


Results for branch branch-2.1
[build #183 on 
builds.a.o|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.1/183/]: 
(x) *{color:red}-1 overall{color}*

details (if available):

(/) {color:green}+1 general checks{color}
-- For more information [see general 
report|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.1/183//General_Nightly_Build_Report/]




(x) {color:red}-1 jdk8 hadoop2 checks{color}
-- For more information [see jdk8 (hadoop2) 
report|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.1/183//JDK8_Nightly_Build_Report_(Hadoop2)/]


(x) {color:red}-1 jdk8 hadoop3 checks{color}
-- For more information [see jdk8 (hadoop3) 
report|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.1/183//JDK8_Nightly_Build_Report_(Hadoop3)/]


(/) {color:green}+1 source release artifact{color}
-- See build output for details.


(/) {color:green}+1 client integration test{color}


> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Fix For: 2.0.2, 2.1.1
>
> Attachments: HBASE-21029.branch-2.0.001.patch, 
> HBASE-21029.branch-2.0.002.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-13 Thread Hudson (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16578635#comment-16578635
 ] 

Hudson commented on HBASE-21029:


Results for branch branch-2.0
[build #671 on 
builds.a.o|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.0/671/]: 
(x) *{color:red}-1 overall{color}*

details (if available):

(/) {color:green}+1 general checks{color}
-- For more information [see general 
report|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.0/671//General_Nightly_Build_Report/]




(x) {color:red}-1 jdk8 hadoop2 checks{color}
-- For more information [see jdk8 (hadoop2) 
report|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.0/671//JDK8_Nightly_Build_Report_(Hadoop2)/]


(x) {color:red}-1 jdk8 hadoop3 checks{color}
-- For more information [see jdk8 (hadoop3) 
report|https://builds.apache.org/job/HBase%20Nightly/job/branch-2.0/671//JDK8_Nightly_Build_Report_(Hadoop3)/]


(/) {color:green}+1 source release artifact{color}
-- See build output for details.


> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Fix For: 2.0.2, 2.1.1
>
> Attachments: HBASE-21029.branch-2.0.001.patch, 
> HBASE-21029.branch-2.0.002.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-13 Thread Allan Yang (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16578221#comment-16578221
 ] 

Allan Yang commented on HBASE-21029:


Pushed to branch-2.0 and branch-2.1, thanks all for reviewing!

> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Fix For: 2.0.2, 2.1.1
>
> Attachments: HBASE-21029.branch-2.0.001.patch, 
> HBASE-21029.branch-2.0.002.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-12 Thread Allan Yang (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16577483#comment-16577483
 ] 

Allan Yang commented on HBASE-21029:


[~yuzhih...@gmail.com], just checked, master branch and branch-2 has 
HBASE-20542, so the problem has fixed. I think we can check in this one only to 
branch-2.0 and branch-2.1?

> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Attachments: HBASE-21029.branch-2.0.001.patch, 
> HBASE-21029.branch-2.0.002.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-10 Thread Ted Yu (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16576479#comment-16576479
 ] 

Ted Yu commented on HBASE-21029:


I applied the test change only and ran:

-Dtest=TestDefaultMemStore#testPutSameCell

The test passed.
Can you come up with test which fails without change to Segment.java ?

Thanks

> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Attachments: HBASE-21029.branch-2.0.001.patch, 
> HBASE-21029.branch-2.0.002.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-10 Thread Hadoop QA (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16576153#comment-16576153
 ] 

Hadoop QA commented on HBASE-21029:
---

| (/) *{color:green}+1 overall{color}* |
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files. {color} |
|| || || || {color:brown} branch-2.0 Compile Tests {color} ||
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10m 31s{color} | {color:green} Patch does not cause any errors with Hadoop 
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| Docker | Client=17.05.0-ce Server=17.05.0-ce Image:yetus/hbase:6f01af0 |
| JIRA Issue | HBASE-21029 |
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 |
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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-10 Thread Yu Li (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16576024#comment-16576024
 ] 

Yu Li commented on HBASE-21029:
---

Patch v2 LGTM, +1

> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Attachments: HBASE-21029.branch-2.0.001.patch, 
> HBASE-21029.branch-2.0.002.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-10 Thread Allan Yang (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16575902#comment-16575902
 ] 

Allan Yang commented on HBASE-21029:


[~carp84], thanks for reviewing, modified as suggested. The failed UT should 
not be related, re-trigger a run.

> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Attachments: HBASE-21029.branch-2.0.001.patch, 
> HBASE-21029.branch-2.0.002.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-09 Thread Hadoop QA (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16574421#comment-16574421
 ] 

Hadoop QA commented on HBASE-21029:
---

| (x) *{color:red}-1 overall{color}* |
\\
\\
|| Vote || Subsystem || Runtime || Comment ||
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41s{color} | {color:blue} Docker mode activated. {color} |
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| {color:green}+1{color} | {color:green} test4tests {color} | {color:green}  0m 
 0s{color} | {color:green} The patch appears to include 1 new or modified test 
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|| Reason || Tests ||
| Failed junit tests | hadoop.hbase.client.TestAsyncTableGetMultiThreaded |
\\
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|| Subsystem || Report/Notes ||
| Docker | Client=17.05.0-ce Server=17.05.0-ce Image:yetus/hbase:6f01af0 |
| JIRA Issue | HBASE-21029 |
| JIRA Patch URL | 
https://issues.apache.org/jira/secure/attachment/12934910/HBASE-21029.branch-2.0.001.patch
 |
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| Build tool | maven |
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/home/jenkins/jenkins-slave/workspace/PreCommit-HBASE-Build/component/dev-support/hbase-personality.sh
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| git revision | branch-2.0 / 7ee4aa459c |
| maven | version: Apache Maven 3.5.4 
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https://builds.apache.org/job/PreCommit-HBASE-Build/13989/artifact/patchprocess/patch-unit-hbase-server.txt
 |
|  Test Results | 
https://builds.apache.org/job/PreCommit-HBASE-Build/13989/testReport/ |
| Max. process+thread count | 4766 (vs. ulimit of 1) |
| modules | C: 

[jira] [Commented] (HBASE-21029) Miscount of memstore's heap/offheap size if same cell was put

2018-08-09 Thread Yu Li (JIRA)


[ 
https://issues.apache.org/jira/browse/HBASE-21029?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16574347#comment-16574347
 ] 

Yu Li commented on HBASE-21029:
---

+1, we should always increase heap size when data size increases.

Minor: store the {{succ || mslabUsed}} result to avoid multiple check?

> Miscount of memstore's heap/offheap size if same cell was put
> -
>
> Key: HBASE-21029
> URL: https://issues.apache.org/jira/browse/HBASE-21029
> Project: HBase
>  Issue Type: Bug
>Affects Versions: 2.1.0, 2.0.1
>Reporter: Allan Yang
>Assignee: Allan Yang
>Priority: Major
> Attachments: HBASE-21029.branch-2.0.001.patch
>
>
> We are now using memstore.heapSize() + memstore.offheapSize() to decide 
> whether a flush is needed. But, if a same cell was put again in memstore, 
> only the memstore's dataSize will be increased, the heap/offheap size won't. 
> We encountered the problem that a user was putting the same kv again and 
> again, but the memstore won't flush since the heap size was not counted 
> properly. The RS was killed by system since not enough memory in the end.
> Actually, if MSLAB is used, the heap/offheap will increase no matter the cell 
> is added or not. IIRC, memstore's heap/offheap size should always bigger than 
> data size. We introduced heap/offheap size besides data size in order to 
> reflect memory footprint more precisely. 
> {code}
> // If there's already a same cell in the CellSet and we are using MSLAB, 
> we must count in the
> // MSLAB allocation size as well, or else there will be memory leak 
> (occupied heap size larger
> // than the counted number)
> if (succ || mslabUsed) {
>   cellSize = getCellLength(cellToAdd);
> }
> // heap/offheap size is changed only if the cell is truly added in the 
> cellSet
> long heapSize = heapSizeChange(cellToAdd, succ);
> long offHeapSize = offHeapSizeChange(cellToAdd, succ);
> {code}



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