[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082780#comment-16082780
]
shane knapp edited comment on SPARK-21367 at 7/11/17 9:29 PM:
--
[~shivaram] that error code 1 is grep failing to find anything matching pandoc
in /var/log/yum.log (meaning pandoc and pandoc-citeproc weren't updating when i
did the system update).
here are the versions we have installed:
{noformat}
[root@amp-jenkins-worker-05 R]# rpm -qa | grep pandoc
pandoc-citeproc-0.9.1.1-1.el6.x86_64
pandoc-1.17.0.3-1.el6.x86_64
{noformat}
EDIT: i just checked the archived yum logs and these two packages are at the
same version as when installed last year.
https://issues.apache.org/jira/browse/SPARK-17420
was (Author: shaneknapp):
[~shivaram] that error code 1 is grep failing to find anything matching pandoc
in /var/log/yum.log (meaning pandoc and pandoc-citeproc weren't updating when i
did the system update).
here are the versions we have installed:
{noformat}
[root@amp-jenkins-worker-05 R]# rpm -qa | grep pandoc
pandoc-citeproc-0.9.1.1-1.el6.x86_64
pandoc-1.17.0.3-1.el6.x86_64
{noformat}
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
> Attachments: R.paks
>
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082757#comment-16082757
]
shane knapp edited comment on SPARK-21367 at 7/11/17 9:34 PM:
--
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
EDIT: i actually reinstalled all of the R packages after i downgraded R to
3.1.1... that's why the dirs are showing the june 20th modification timestamp.
-looking in /usr/lib64/R/library, i see that it got updated on june 20th:
{noformat}
[root@amp-jenkins-worker-05 library]# ls -ld knitr/
drwxr-xr-x. 14 root root 4096 Jun 20 21:02 knitr/
{noformat}
-
was (Author: shaneknapp):
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
looking in /usr/lib64/R/library, i see that it got updated on june 20th:
{noformat}
[root@amp-jenkins-worker-05 library]# ls -ld knitr/
drwxr-xr-x. 14 root root 4096 Jun 20 21:02 knitr/
{noformat}
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
> Attachments: R.paks
>
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082757#comment-16082757
]
shane knapp edited comment on SPARK-21367 at 7/11/17 9:34 PM:
--
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
EDIT: i actually reinstalled all of the R packages after i downgraded R to
3.1.1... that's why the dirs are showing the june 20th modification timestamp.
-looking in /usr/lib64/R/library, i see that it got updated on june 20th:-
was (Author: shaneknapp):
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
EDIT: i actually reinstalled all of the R packages after i downgraded R to
3.1.1... that's why the dirs are showing the june 20th modification timestamp.
-looking in /usr/lib64/R/library, i see that it got updated on june 20th:-
{noformat}
[root@amp-jenkins-worker-05 library]# ls -ld knitr/
drwxr-xr-x. 14 root root 4096 Jun 20 21:02 knitr/
{noformat}
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
> Attachments: R.paks
>
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082757#comment-16082757
]
shane knapp edited comment on SPARK-21367 at 7/11/17 9:34 PM:
--
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
EDIT: i actually reinstalled all of the R packages after i downgraded R to
3.1.1... that's why the dirs are showing the june 20th modification timestamp.
-looking in /usr/lib64/R/library, i see that it got updated on june 20th:-
{noformat}
[root@amp-jenkins-worker-05 library]# ls -ld knitr/
drwxr-xr-x. 14 root root 4096 Jun 20 21:02 knitr/
{noformat}
was (Author: shaneknapp):
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
EDIT: i actually reinstalled all of the R packages after i downgraded R to
3.1.1... that's why the dirs are showing the june 20th modification timestamp.
-looking in /usr/lib64/R/library, i see that it got updated on june 20th:
{noformat}
[root@amp-jenkins-worker-05 library]# ls -ld knitr/
drwxr-xr-x. 14 root root 4096 Jun 20 21:02 knitr/
{noformat}
-
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
> Attachments: R.paks
>
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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-
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082757#comment-16082757
]
shane knapp edited comment on SPARK-21367 at 7/11/17 6:56 PM:
--
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
looking in /usr/lib64/R/library, i see that it got updated on june 20th:
{noformat}
[root@amp-jenkins-worker-05 library]# ls -ld knitr/
drwxr-xr-x. 14 root root 4096 Jun 20 21:02 knitr/
{noformat}
was (Author: shaneknapp):
here's what version of knitr is installed:
{noformat}
knitr"knitr""/usr/lib64/R/library" "1.16" NA
knitr"R (>= 3.1.0)"
knitr"evaluate (>= 0.10), digest, highr, markdown, stringr (>=
0.6),\nyaml, methods, tools"
{noformat}
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
> Attachments: R.paks
>
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
This message was sent by Atlassian JIRA
(v6.4.14#64029)
-
To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org
For additional commands, e-mail: issues-h...@spark.apache.org
[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[ https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082661#comment-16082661 ] shane knapp edited comment on SPARK-21367 at 7/11/17 6:08 PM: -- ok, so i dug through the old build logs and the warning started happening during the R version rollback that happened on june 20th. here's the first build that had the warning in it: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/78353/ note the timing: - R accidentally upgraded @ ~7am june 20th (affected packages: R-java-3.1.1-7, R-3.1.1-7, R-java-devel-3.1.1-7, libRmath-devel-3.1.1-7, R-core-devel-3.1.1-7, libRmath-3.1.1-7, R-core-3.1.1-7, R-devel-3.1.1-7). - no warnings between ~7am and ~9pm - we started getting the Roxygen2 warnings @ ~9pm (the build linked above) - i rolled back R ~830pm to the 3.1.1* versions sadly, all the logs from the build failures yesterday are gone, so i'll see if i can reproduce locally on another centos box set up the same way... and since i will need to deploy this box from scratch, it'll take a couple of hours. Y R BUILDS SOMETIMES SO HARD? was (Author: shaneknapp): ok, so i dug through the old build logs and the warning started happening during the R version rollback that happened on june 20th. here's the first build that had the warning in it: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/78353/ note the timing: - R accidentally upgraded @ ~7am june 20th (affected packages: R-java-3.1.1-7, R-3.1.1-7, R-java-devel-3.1.1-7, libRmath-devel-3.1.1-7, R-core-devel-3.1.1-7, libRmath-3.1.1-7, R-core-3.1.1-7, R-devel-3.1.1-7). - no warnings between ~7am and ~9pm - we started getting the Roxygen2 warnings @ ~9pm (the build linked above) - i rolled back R ~9pm (about the same time) sadly, all the logs from the build failures yesterday are gone, so i'll see if i can reproduce locally on another centos box set up the same way... and since i will need to deploy this box from scratch, it'll take a couple of hours. Y R BUILDS SOMETIMES SO HARD? > R older version of Roxygen2 on Jenkins > -- > > Key: SPARK-21367 > URL: https://issues.apache.org/jira/browse/SPARK-21367 > Project: Spark > Issue Type: Bug > Components: SparkR >Affects Versions: 2.3.0 >Reporter: Felix Cheung >Assignee: shane knapp > > Getting this message from a recent build. > https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console > Warning messages: > 1: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > 2: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > * installing *source* package 'SparkR' ... > ** R > We have been running with 5.0.1 and haven't changed for a year. > NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet. -- This message was sent by Atlassian JIRA (v6.4.14#64029) - To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org
[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[ https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082661#comment-16082661 ] shane knapp edited comment on SPARK-21367 at 7/11/17 6:07 PM: -- ok, so i dug through the old build logs and the warning started happening during the R version rollback that happened on june 20th. here's the first build that had the warning in it: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/78353/ note the timing: - R accidentally upgraded @ ~7am june 20th (affected packages: R-java-3.1.1-7, R-3.1.1-7, R-java-devel-3.1.1-7, libRmath-devel-3.1.1-7, R-core-devel-3.1.1-7, libRmath-3.1.1-7, R-core-3.1.1-7, R-devel-3.1.1-7). - no warnings between ~7am and ~9pm - we started getting the Roxygen2 warnings @ ~9pm (the build linked above) - i rolled back R ~9pm (about the same time) sadly, all the logs from the build failures yesterday are gone, so i'll see if i can reproduce locally on another centos box set up the same way... and since i will need to deploy this box from scratch, it'll take a couple of hours. Y R BUILDS SOMETIMES SO HARD? was (Author: shaneknapp): ok, so i dug through the old build logs and the warning started happening during the R version rollback that happened on june 20th. here's the first build that had the warning in it: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/78353/ note the timing: - R accidentally upgraded @ ~7am june 20th (affected packages: R-java-3.1.1-7, R-3.1.1-7, R-java-devel-3.1.1-7, libRmath-devel-3.1.1-7, R-core-devel-3.1.1-7, libRmath-3.1.1-7, R-core-3.1.1-7, R-devel-3.1.1-7) - no warnings between ~7am and ~9pm - we started getting the Roxygen2 warnings @ ~9pm (the build linked above) - i rolled back R ~9pm (about the same time) here's what i rolled back: libRmath-devel-3.1.1-7.el6.x86_64.rpm R-core-3.1.1-7.el6.x86_64.rpm R-java-3.1.1-7.el6.x86_64.rpm R-3.1.1-7.el6.x86_64.rpm R-core-devel-3.1.1-7.el6.x86_64.rpm R-java-devel-3.1.1-7.el6.x86_64.rpm libRmath-3.1.1-7.el6.x86_64.rpm R-devel-3.1.1-7.el6.x86_64.rpm sadly, all the logs from the build failures yesterday are gone, so i'll see if i can reproduce locally on another centos box set up the same way... and since i will need to deploy this box from scratch, it'll take a couple of hours. Y R BUILDS SOMETIMES SO HARD? > R older version of Roxygen2 on Jenkins > -- > > Key: SPARK-21367 > URL: https://issues.apache.org/jira/browse/SPARK-21367 > Project: Spark > Issue Type: Bug > Components: SparkR >Affects Versions: 2.3.0 >Reporter: Felix Cheung >Assignee: shane knapp > > Getting this message from a recent build. > https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console > Warning messages: > 1: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > 2: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > * installing *source* package 'SparkR' ... > ** R > We have been running with 5.0.1 and haven't changed for a year. > NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet. -- This message was sent by Atlassian JIRA (v6.4.14#64029) - To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org
[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[ https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082661#comment-16082661 ] shane knapp edited comment on SPARK-21367 at 7/11/17 6:06 PM: -- ok, so i dug through the old build logs and the warning started happening during the R version rollback that happened on june 20th. here's the first build that had the warning in it: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/78353/ note the timing: - R accidentally upgraded @ ~7am june 20th (affected packages: R-java-3.1.1-7, R-3.1.1-7, R-java-devel-3.1.1-7, libRmath-devel-3.1.1-7, R-core-devel-3.1.1-7, libRmath-3.1.1-7, R-core-3.1.1-7, R-devel-3.1.1-7) - no warnings between ~7am and ~9pm - we started getting the Roxygen2 warnings @ ~9pm (the build linked above) - i rolled back R ~9pm (about the same time) here's what i rolled back: libRmath-devel-3.1.1-7.el6.x86_64.rpm R-core-3.1.1-7.el6.x86_64.rpm R-java-3.1.1-7.el6.x86_64.rpm R-3.1.1-7.el6.x86_64.rpm R-core-devel-3.1.1-7.el6.x86_64.rpm R-java-devel-3.1.1-7.el6.x86_64.rpm libRmath-3.1.1-7.el6.x86_64.rpm R-devel-3.1.1-7.el6.x86_64.rpm sadly, all the logs from the build failures yesterday are gone, so i'll see if i can reproduce locally on another centos box set up the same way... and since i will need to deploy this box from scratch, it'll take a couple of hours. Y R BUILDS SOMETIMES SO HARD? was (Author: shaneknapp): ok, so i dug through the old build logs and the warning started happening during the R version rollback that happened on june 20th. here's the first build that had the warning in it: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/78353/ note the timing: - R accidentally upgraded @ ~7am june 20th - no warnings between ~7am and ~9pm - we started getting the Roxygen2 warnings @ ~9pm (the build linked above) - i rolled back R ~9pm (about the same time) here's what i rolled back: libRmath-devel-3.1.1-7.el6.x86_64.rpm R-core-3.1.1-7.el6.x86_64.rpm R-java-3.1.1-7.el6.x86_64.rpm R-3.1.1-7.el6.x86_64.rpm R-core-devel-3.1.1-7.el6.x86_64.rpm R-java-devel-3.1.1-7.el6.x86_64.rpm libRmath-3.1.1-7.el6.x86_64.rpm R-devel-3.1.1-7.el6.x86_64.rpm sadly, all the logs from the build failures yesterday are gone, so i'll see if i can reproduce locally on another centos box set up the same way... and since i will need to deploy this box from scratch, it'll take a couple of hours. Y R BUILDS SOMETIMES SO HARD? > R older version of Roxygen2 on Jenkins > -- > > Key: SPARK-21367 > URL: https://issues.apache.org/jira/browse/SPARK-21367 > Project: Spark > Issue Type: Bug > Components: SparkR >Affects Versions: 2.3.0 >Reporter: Felix Cheung >Assignee: shane knapp > > Getting this message from a recent build. > https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console > Warning messages: > 1: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > 2: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > * installing *source* package 'SparkR' ... > ** R > We have been running with 5.0.1 and haven't changed for a year. > NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet. -- This message was sent by Atlassian JIRA (v6.4.14#64029) - To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org
[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16081720#comment-16081720
]
Felix Cheung edited comment on SPARK-21367 at 7/11/17 6:28 AM:
---
I'm not sure exactly why yet, but comparing the working and non-working build
working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
{code}
not working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
{code}
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be to be expected)
was (Author: felixcheung):
I'm not sure exactly why yet, but comparing the working and non-working build
working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
{code}
not working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
{code}
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be to be expected)
As explained in the description above, I"m pretty sure these are not in the
build a while ago
"
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
"
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16081720#comment-16081720
]
Felix Cheung edited comment on SPARK-21367 at 7/11/17 6:33 AM:
---
I'm not sure exactly why yet, but comparing the working and non-working build
working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
{code}
not working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
{code}
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be completely expected - without Rd files it will not have the
documentation hence the check will fail)
was (Author: felixcheung):
I'm not sure exactly why yet, but comparing the working and non-working build
working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
{code}
not working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
{code}
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be to be expected)
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16081744#comment-16081744
]
Felix Cheung edited comment on SPARK-21367 at 7/11/17 6:26 AM:
---
I think I found the first error, it's one build before the build failures
listed above, 79470
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79470/console
{code}
Updating roxygen version in
/home/jenkins/workspace/SparkPullRequestBuilder/R/pkg/DESCRIPTION
Deleting AFTSurvivalRegressionModel-class.Rd
Deleting ALSModel-class.Rd
...
There were 50 or more warnings (use warnings() to see the first 50)
{code}
Whereas this build from mid June
https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/SparkPullRequestBuilder/78020/console
was (Author: felixcheung):
I think I found the first error, it's one build before the build failures
listed above, 79470
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79470/console
{code}
Updating roxygen version in
/home/jenkins/workspace/SparkPullRequestBuilder/R/pkg/DESCRIPTION
Deleting AFTSurvivalRegressionModel-class.Rd
Deleting ALSModel-class.Rd
...
There were 50 or more warnings (use warnings() to see the first 50)
{code}
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16081744#comment-16081744
]
Felix Cheung edited comment on SPARK-21367 at 7/11/17 6:26 AM:
---
I think I found the first error, it's one build before the build failures
listed above, 79470
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79470/console
{code}
Updating roxygen version in
/home/jenkins/workspace/SparkPullRequestBuilder/R/pkg/DESCRIPTION
Deleting AFTSurvivalRegressionModel-class.Rd
Deleting ALSModel-class.Rd
...
There were 50 or more warnings (use warnings() to see the first 50)
{code}
Whereas this build from mid June
https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/SparkPullRequestBuilder/78020/console
Does NOT have this "Need roxygen2 >= 5.0.0 but loaded version is 4.1.1" message
in the console output
was (Author: felixcheung):
I think I found the first error, it's one build before the build failures
listed above, 79470
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79470/console
{code}
Updating roxygen version in
/home/jenkins/workspace/SparkPullRequestBuilder/R/pkg/DESCRIPTION
Deleting AFTSurvivalRegressionModel-class.Rd
Deleting ALSModel-class.Rd
...
There were 50 or more warnings (use warnings() to see the first 50)
{code}
Whereas this build from mid June
https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/SparkPullRequestBuilder/78020/console
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16081720#comment-16081720
]
Felix Cheung edited comment on SPARK-21367 at 7/11/17 6:06 AM:
---
I'm not sure exactly why yet, but comparing the working and non-working build
working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
{code}
not working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
{code}
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be to be expected)
As explained in the description above, I"m pretty sure these are not in the
build a while ago
"
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
"
was (Author: felixcheung):
I'm not sure exactly why yet, but comparing the working and non-working buid
working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
{code}
not working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
{code}
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be to be expected)
As explained in the description above, I"m pretty sure these are not in the
build a while ago
"
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
"
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16081720#comment-16081720
]
Felix Cheung edited comment on SPARK-21367 at 7/11/17 6:02 AM:
---
I'm not sure exactly why yet, but comparing the working and non-working buid
working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
{code}
not working:
{code}
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
{code}
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be to be expected)
As explained in the description above, I"m pretty sure these are not in the
build a while ago
"
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
"
was (Author: felixcheung):
I'm not sure exactly why yet, but comparing the working and non-working buid
working:
First time using roxygen2 4.0. Upgrading automatically...
Writing SparkDataFrame.Rd
Writing printSchema.Rd
Writing schema.Rd
Writing explain.Rd
...
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
2: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
* installing *source* package 'SparkR' ...
not working:
First time using roxygen2 4.0. Upgrading automatically...
There were 50 or more warnings (use warnings() to see the first 50)
* installing *source* package 'SparkR' ...
Bascially, the .Rd files are not getting created (because of warnings that are
not captured)
That cause the CRAN check to fail with
"checking for missing documentation entries ... WARNING
Undocumented code objects:
'%<=>%' 'add_months' 'agg' 'approxCountDistinc"
(which would be to be expected)
As explained in the description above, I"m pretty sure these are not in the
build a while ago
"
Warning messages:
1: In check_dep_version(pkg, version, compare) :
Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
"
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16081173#comment-16081173
]
Dongjoon Hyun edited comment on SPARK-21367 at 7/10/17 9:21 PM:
Hi, All.
After this, many builds seems to fail consecutively.
-
https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/SparkPullRequestBuilder/
{code}
This patch fails SparkR unit tests.
{code}
was (Author: dongjoon):
Hi, All.
After this, many builds seems to fail consecutively.
{code}
This patch fails SparkR unit tests.
{code}
> R older version of Roxygen2 on Jenkins
> --
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.3.0
>Reporter: Felix Cheung
>Assignee: shane knapp
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
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[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[ https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16080728#comment-16080728 ] Felix Cheung edited comment on SPARK-21367 at 7/10/17 5:45 PM: --- [~shaneknapp] could you check? thanks! was (Author: felixcheung): ~shane knapp could you check? thanks! > R older version of Roxygen2 on Jenkins > -- > > Key: SPARK-21367 > URL: https://issues.apache.org/jira/browse/SPARK-21367 > Project: Spark > Issue Type: Bug > Components: SparkR >Affects Versions: 2.3.0 >Reporter: Felix Cheung > > Getting this message from a recent build. > https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console > Warning messages: > 1: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > 2: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > * installing *source* package 'SparkR' ... > ** R > We have been running with 5.0.1 and haven't changed for a year. > NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet. -- This message was sent by Atlassian JIRA (v6.4.14#64029) - To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org
[jira] [Comment Edited] (SPARK-21367) R older version of Roxygen2 on Jenkins
[ https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16080728#comment-16080728 ] Felix Cheung edited comment on SPARK-21367 at 7/10/17 5:44 PM: --- ~shane knapp could you check? thanks! was (Author: felixcheung): @shane knapp could you check? thanks! > R older version of Roxygen2 on Jenkins > -- > > Key: SPARK-21367 > URL: https://issues.apache.org/jira/browse/SPARK-21367 > Project: Spark > Issue Type: Bug > Components: SparkR >Affects Versions: 2.3.0 >Reporter: Felix Cheung > > Getting this message from a recent build. > https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console > Warning messages: > 1: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > 2: In check_dep_version(pkg, version, compare) : > Need roxygen2 >= 5.0.0 but loaded version is 4.1.1 > * installing *source* package 'SparkR' ... > ** R > We have been running with 5.0.1 and haven't changed for a year. > NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet. -- This message was sent by Atlassian JIRA (v6.4.14#64029) - To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org
