[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461983#comment-16461983
]
Felix Cheung commented on SPARK-24152:
--
ok good.
in the event this reoccurs persistently,
option 1:
* since we have NO_TESTS, we could remove --as-cran from this line
[https://github.com/apache/spark/blob/master/R/check-cran.sh#L54] (temporarily)
option 2:
- we could set
_R_CHECK_CRAN_INCOMING_ to "FALSE" in the environment to disable this check
check_CRAN_incoming()
(see
[http://mtweb.cs.ucl.ac.uk/mus/bin/install_R/R-3.1.1/src/library/tools/R/check.R)]
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Assignee: Liang-Chi Hsieh
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461980#comment-16461980
]
Hyukjin Kwon commented on SPARK-24152:
--
Seems fixed just now. I found one build passed -
https://github.com/apache/spark/pull/21190#issuecomment-386198706 but let me
check other ones before resolving this ..
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Assignee: Liang-Chi Hsieh
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461974#comment-16461974
]
Felix Cheung commented on SPARK-24152:
--
Is this still a problem?
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Assignee: Liang-Chi Hsieh
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461971#comment-16461971
]
Hyukjin Kwon commented on SPARK-24152:
--
FYI [~smilegator] and [~cloud_fan]
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Assignee: Liang-Chi Hsieh
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461965#comment-16461965
]
Hyukjin Kwon commented on SPARK-24152:
--
Thanks [~viirya], I retriggered one build. Will resolve this once it gets
passed.
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Assignee: Liang-Chi Hsieh
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461962#comment-16461962
]
Liang-Chi Hsieh commented on SPARK-24152:
-
CRAN sysadmin replied me it should be fixed now. I can't access laptop so
don't confirm it. Maybe someone can confirm it by checking if Jenkins R
tests pass now.
Thanks.
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461932#comment-16461932
]
Hyukjin Kwon commented on SPARK-24152:
--
For the past issue, it was fixed within only a couple of hours. Will take an
action if it takes a longer while.
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
--
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461931#comment-16461931
]
Shivaram Venkataraman commented on SPARK-24152:
---
If this is blocking all PRs I think its fine to temporarily remove the CRAN
check from Jenkins – We'll just need to be extra careful while merging SparkR
PRs for a short period of time.
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461929#comment-16461929
]
Hyukjin Kwon commented on SPARK-24152:
--
>From Liang-Chi's comment and given previous discussion and resolution -
>[https://github.com/apache/spark/pull/20005,] seems it's a problem from R's.
>We (mainly he) investigated this problem there and he solved that by asking /
>reporting the problem to R dev. I think it's outside of Spark and we could
>wait for the response.
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461920#comment-16461920
]
Shivaram Venkataraman commented on SPARK-24152:
---
Unfortunately I dont have time to look at this till Friday. Do we know if the
problem is in SparkR or from some other package ?
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461867#comment-16461867
]
Liang-Chi Hsieh commented on SPARK-24152:
-
Thanks [~hyukjin.kwon] for pinging me. I found a problem in CRAN PACKAGES.in
file. Seems it causes the R test failure again. Already emailed to cran
sysadmin for help.
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
[
https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461798#comment-16461798
]
Hyukjin Kwon commented on SPARK-24152:
--
cc [~viirya] too
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder and master branch test fails with the following SparkR error with
> unknown reason. The following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> *PR BUILDER*
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
> *MASTER BRANCH*
> -
> https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/4458/
> (Fail with no failures)
> This is critical because we already start to merge the PR by ignoring this
> **known unkonwn** SparkR failure.
> - https://github.com/apache/spark/pull/21175
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[jira] [Commented] (SPARK-24152) Flaky Test: SparkR
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https://issues.apache.org/jira/browse/SPARK-24152?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16461328#comment-16461328
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Dongjoon Hyun commented on SPARK-24152:
---
cc [~shivaram], [~felixcheung], [~yanboliang]
> Flaky Test: SparkR
> --
>
> Key: SPARK-24152
> URL: https://issues.apache.org/jira/browse/SPARK-24152
> Project: Spark
> Issue Type: Bug
> Components: SparkR
>Affects Versions: 2.4.0
>Reporter: Dongjoon Hyun
>Priority: Critical
>
> PR builder fails with the following SparkR error with unknown reason. The
> following is an error message from that.
> {code}
> * this is package 'SparkR' version '2.4.0'
> * checking CRAN incoming feasibility ...Error in
> .check_package_CRAN_incoming(pkgdir) :
> dims [product 24] do not match the length of object [0]
> Execution halted
> {code}
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/90039/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89983/
> - https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/89998/
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