[jira] [Commented] (SPARK-28016) Spark hangs when an execution plan has many projections on nested structs
[
https://issues.apache.org/jira/browse/SPARK-28016?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16862898#comment-16862898
]
Ruslan Yushchenko commented on SPARK-28016:
---
Attached a self-contained example ([^SparkApp1IssueSelfContained.scala]).
Slightly simplified the example, only numeric fields are used now. Also, the
number of transformations is now easily changeable by changing the upper bound
of the `Range()`.
This example also reproduces the issue in the current master. On master it does
not produce a timeout error, just freezes.
> Spark hangs when an execution plan has many projections on nested structs
> -
>
> Key: SPARK-28016
> URL: https://issues.apache.org/jira/browse/SPARK-28016
> Project: Spark
> Issue Type: Bug
> Components: Optimizer
>Affects Versions: 2.4.3
> Environment: Tried in
> * Spark 2.2.1, Spark 2.4.3 in local mode on Linux, MasOS and Windows
> * Spark 2.4.3 / Yarn on a Linux cluster
>Reporter: Ruslan Yushchenko
>Priority: Major
> Attachments: NestedOps.scala, SparkApp1Issue.scala,
> SparkApp1IssueSelfContained.scala, SparkApp2Workaround.scala,
> spark-app-nested.tgz
>
>
> Spark applications freeze on execution plan optimization stage (Catalyst)
> when a logical execution plan contains a lot of projections that operate on
> nested struct fields.
> 2 Spark Applications are attached. One demonstrates the issue, the other
> demonstrates a workaround. Also, an archive is attached where these jobs are
> packages as a Maven Project.
> To reproduce the attached Spark App does the following:
> * A small dataframe is created from a JSON example.
> * A nested withColumn map transformation is used to apply a transformation
> on a struct field and create a new struct field. The code for this
> transformation is also attached.
> * Once more than 11 such transformations are applied the Catalyst optimizer
> freezes on optimizing the execution plan
> {code:scala}
> package za.co.absa.spark.app
> import org.apache.spark.sql._
> import org.apache.spark.sql.functions._
> object SparkApp1Issue {
> // A sample data for a dataframe with nested structs
> val sample =
> """
> |{
> | "strings": {
> |"simple": "Culpa repellat nesciunt accusantium",
> |"all_random": "DESebo8d%fL9sX@AzVin",
> |"whitespaces": "qbbl"
> | },
> | "numerics": {
> |"small_positive": 722,
> |"small_negative": -660,
> |"big_positive": 669223368251997,
> |"big_negative": -161176863305841,
> |"zero": 0
> | }
> |}
> """.stripMargin ::
> """{
> | "strings": {
> |"simple": "Accusamus quia vel deleniti",
> |"all_random": "rY*KS]jPBpa[",
> |"whitespaces": " t e t rp z p"
> | },
> | "numerics": {
> |"small_positive": 268,
> |"small_negative": -134,
> |"big_positive": 768990048149640,
> |"big_negative": -684718954884696,
> |"zero": 0
> | }
> |}
> |""".stripMargin ::
> """{
> | "strings": {
> |"simple": "Quia numquam deserunt delectus rem est",
> |"all_random": "GmRdQlE4Avn1hSlVPAH",
> |"whitespaces": " c sayv drf "
> | },
> | "numerics": {
> |"small_positive": 909,
> |"small_negative": -363,
> |"big_positive": 592517494751902,
> |"big_negative": -703224505589638,
> |"zero": 0
> | }
> |}
> |""".stripMargin :: Nil
> /**
> * This Spark Job demonstrates an issue of execution plan freezing when
> there are a lot of projections
> * involving nested structs in an execution plan.
> *
> * The example works as follows:
> * - A small dataframe is created from a JSON example above
> * - A nested withColumn map transformation is used to apply a
> transformation on a struct field and create
> * a new struct field.
> * - Once more than 11 such transformations are applied the Catalyst
> optimizer freezes on optimizing
> * the execution plan
> */
> def main(args: Array[String]): Unit = {
> val sparkBuilder = SparkSession.builder().appName("Nested Projections
> Issue")
> val spark = sparkBuilder
> .master("local[4]")
> .getOrCreate()
> import spark.implicits._
> import za.co.absa.spark.utils.NestedOps.DataSetWrapper
> val df = spark.read.json(sample.toDS)
> // Apply several uppercase and negation transformations
> val dfOutput = df
> .nestedWithColumnMap("strings.simple", "strings.uppercase1", c =>
> upper(c))
>
[jira] [Commented] (SPARK-28016) Spark hangs when an execution plan has many projections on nested structs
[
https://issues.apache.org/jira/browse/SPARK-28016?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16862752#comment-16862752
]
Ruslan Yushchenko commented on SPARK-28016:
---
Thank you for your quick response.
* Will make the example self contained.
* Will run on current master and let you know if I can reproduce it.
> Spark hangs when an execution plan has many projections on nested structs
> -
>
> Key: SPARK-28016
> URL: https://issues.apache.org/jira/browse/SPARK-28016
> Project: Spark
> Issue Type: Bug
> Components: Optimizer
>Affects Versions: 2.4.3
> Environment: Tried in
> * Spark 2.2.1, Spark 2.4.3 in local mode on Linux, MasOS and Windows
> * Spark 2.4.3 / Yarn on a Linux cluster
>Reporter: Ruslan Yushchenko
>Priority: Major
> Attachments: NestedOps.scala, SparkApp1Issue.scala,
> SparkApp2Workaround.scala, spark-app-nested.tgz
>
>
> Spark applications freeze on execution plan optimization stage (Catalyst)
> when a logical execution plan contains a lot of projections that operate on
> nested struct fields.
> 2 Spark Applications are attached. One demonstrates the issue, the other
> demonstrates a workaround. Also, an archive is attached where these jobs are
> packages as a Maven Project.
> To reproduce the attached Spark App does the following:
> * A small dataframe is created from a JSON example.
> * A nested withColumn map transformation is used to apply a transformation
> on a struct field and create a new struct field. The code for this
> transformation is also attached.
> * Once more than 11 such transformations are applied the Catalyst optimizer
> freezes on optimizing the execution plan
> {code:scala}
> package za.co.absa.spark.app
> import org.apache.spark.sql._
> import org.apache.spark.sql.functions._
> object SparkApp1Issue {
> // A sample data for a dataframe with nested structs
> val sample =
> """
> |{
> | "strings": {
> |"simple": "Culpa repellat nesciunt accusantium",
> |"all_random": "DESebo8d%fL9sX@AzVin",
> |"whitespaces": "qbbl"
> | },
> | "numerics": {
> |"small_positive": 722,
> |"small_negative": -660,
> |"big_positive": 669223368251997,
> |"big_negative": -161176863305841,
> |"zero": 0
> | }
> |}
> """.stripMargin ::
> """{
> | "strings": {
> |"simple": "Accusamus quia vel deleniti",
> |"all_random": "rY*KS]jPBpa[",
> |"whitespaces": " t e t rp z p"
> | },
> | "numerics": {
> |"small_positive": 268,
> |"small_negative": -134,
> |"big_positive": 768990048149640,
> |"big_negative": -684718954884696,
> |"zero": 0
> | }
> |}
> |""".stripMargin ::
> """{
> | "strings": {
> |"simple": "Quia numquam deserunt delectus rem est",
> |"all_random": "GmRdQlE4Avn1hSlVPAH",
> |"whitespaces": " c sayv drf "
> | },
> | "numerics": {
> |"small_positive": 909,
> |"small_negative": -363,
> |"big_positive": 592517494751902,
> |"big_negative": -703224505589638,
> |"zero": 0
> | }
> |}
> |""".stripMargin :: Nil
> /**
> * This Spark Job demonstrates an issue of execution plan freezing when
> there are a lot of projections
> * involving nested structs in an execution plan.
> *
> * The example works as follows:
> * - A small dataframe is created from a JSON example above
> * - A nested withColumn map transformation is used to apply a
> transformation on a struct field and create
> * a new struct field.
> * - Once more than 11 such transformations are applied the Catalyst
> optimizer freezes on optimizing
> * the execution plan
> */
> def main(args: Array[String]): Unit = {
> val sparkBuilder = SparkSession.builder().appName("Nested Projections
> Issue")
> val spark = sparkBuilder
> .master("local[4]")
> .getOrCreate()
> import spark.implicits._
> import za.co.absa.spark.utils.NestedOps.DataSetWrapper
> val df = spark.read.json(sample.toDS)
> // Apply several uppercase and negation transformations
> val dfOutput = df
> .nestedWithColumnMap("strings.simple", "strings.uppercase1", c =>
> upper(c))
> .nestedWithColumnMap("strings.all_random", "strings.uppercase2", c =>
> upper(c))
> .nestedWithColumnMap("strings.whitespaces", "strings.uppercase3", c =>
> upper(c))
> .nestedWithColumnMap("numerics.small_positive", "numerics.num1", c =>
> -c)
>
[jira] [Commented] (SPARK-28016) Spark hangs when an execution plan has many projections on nested structs
[
https://issues.apache.org/jira/browse/SPARK-28016?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16862693#comment-16862693
]
Hyukjin Kwon commented on SPARK-28016:
--
Cannot reproduce in the current master.
{code}
scala> dfOutput.show
19/06/13 12:21:08 WARN package: Truncated the string representation of a plan
since it was too large. This behavior can be adjusted by setting
'spark.sql.debug.maxToStringFields'.
+++
|numerics| strings|
+++
|[-161176863305841...|[DESebo8d%fL9sX@A...|
|[-684718954884696...|[rY*KS]jP...|
|[-703224505589638...|[GmRdQlE4Avn1hSlV...|
+++
{code}
> Spark hangs when an execution plan has many projections on nested structs
> -
>
> Key: SPARK-28016
> URL: https://issues.apache.org/jira/browse/SPARK-28016
> Project: Spark
> Issue Type: Bug
> Components: Optimizer
>Affects Versions: 2.4.3
> Environment: Tried in
> * Spark 2.2.1, Spark 2.4.3 in local mode on Linux, MasOS and Windows
> * Spark 2.4.3 / Yarn on a Linux cluster
>Reporter: Ruslan Yushchenko
>Priority: Major
> Attachments: NestedOps.scala, SparkApp1Issue.scala,
> SparkApp2Workaround.scala, spark-app-nested.tgz
>
>
> Spark applications freeze on execution plan optimization stage (Catalyst)
> when a logical execution plan contains a lot of projections that operate on
> nested struct fields.
> 2 Spark Applications are attached. One demonstrates the issue, the other
> demonstrates a workaround. Also, an archive is attached where these jobs are
> packages as a Maven Project.
> To reproduce the attached Spark App does the following:
> * A small dataframe is created from a JSON example.
> * A nested withColumn map transformation is used to apply a transformation
> on a struct field and create a new struct field. The code for this
> transformation is also attached.
> * Once more than 11 such transformations are applied the Catalyst optimizer
> freezes on optimizing the execution plan
> {code:scala}
> package za.co.absa.spark.app
> import org.apache.spark.sql._
> import org.apache.spark.sql.functions._
> object SparkApp1Issue {
> // A sample data for a dataframe with nested structs
> val sample =
> """
> |{
> | "strings": {
> |"simple": "Culpa repellat nesciunt accusantium",
> |"all_random": "DESebo8d%fL9sX@AzVin",
> |"whitespaces": "qbbl"
> | },
> | "numerics": {
> |"small_positive": 722,
> |"small_negative": -660,
> |"big_positive": 669223368251997,
> |"big_negative": -161176863305841,
> |"zero": 0
> | }
> |}
> """.stripMargin ::
> """{
> | "strings": {
> |"simple": "Accusamus quia vel deleniti",
> |"all_random": "rY*KS]jPBpa[",
> |"whitespaces": " t e t rp z p"
> | },
> | "numerics": {
> |"small_positive": 268,
> |"small_negative": -134,
> |"big_positive": 768990048149640,
> |"big_negative": -684718954884696,
> |"zero": 0
> | }
> |}
> |""".stripMargin ::
> """{
> | "strings": {
> |"simple": "Quia numquam deserunt delectus rem est",
> |"all_random": "GmRdQlE4Avn1hSlVPAH",
> |"whitespaces": " c sayv drf "
> | },
> | "numerics": {
> |"small_positive": 909,
> |"small_negative": -363,
> |"big_positive": 592517494751902,
> |"big_negative": -703224505589638,
> |"zero": 0
> | }
> |}
> |""".stripMargin :: Nil
> /**
> * This Spark Job demonstrates an issue of execution plan freezing when
> there are a lot of projections
> * involving nested structs in an execution plan.
> *
> * The example works as follows:
> * - A small dataframe is created from a JSON example above
> * - A nested withColumn map transformation is used to apply a
> transformation on a struct field and create
> * a new struct field.
> * - Once more than 11 such transformations are applied the Catalyst
> optimizer freezes on optimizing
> * the execution plan
> */
> def main(args: Array[String]): Unit = {
> val sparkBuilder = SparkSession.builder().appName("Nested Projections
> Issue")
> val spark = sparkBuilder
> .master("local[4]")
> .getOrCreate()
> import spark.implicits._
> import za.co.absa.spark.utils.NestedOps.DataSetWrapper
> val df = spark.read.json(sample.toDS)
> // Apply several uppercase and negation
[jira] [Commented] (SPARK-28016) Spark hangs when an execution plan has many projections on nested structs
[
https://issues.apache.org/jira/browse/SPARK-28016?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16862682#comment-16862682
]
Hyukjin Kwon commented on SPARK-28016:
--
Can you narrow down and make a self-contained reproducer without such codes
like {{DataSetWrapper}}?
> Spark hangs when an execution plan has many projections on nested structs
> -
>
> Key: SPARK-28016
> URL: https://issues.apache.org/jira/browse/SPARK-28016
> Project: Spark
> Issue Type: Bug
> Components: Optimizer
>Affects Versions: 2.4.3
> Environment: Tried in
> * Spark 2.2.1, Spark 2.4.3 in local mode on Linux, MasOS and Windows
> * Spark 2.4.3 / Yarn on a Linux cluster
>Reporter: Ruslan Yushchenko
>Priority: Major
> Attachments: NestedOps.scala, SparkApp1Issue.scala,
> SparkApp2Workaround.scala, spark-app-nested.tgz
>
>
> Spark applications freeze on execution plan optimization stage (Catalyst)
> when a logical execution plan contains a lot of projections that operate on
> nested struct fields.
> 2 Spark Applications are attached. One demonstrates the issue, the other
> demonstrates a workaround. Also, an archive is attached where these jobs are
> packages as a Maven Project.
> To reproduce the attached Spark App does the following:
> * A small dataframe is created from a JSON example.
> * A nested withColumn map transformation is used to apply a transformation
> on a struct field and create a new struct field. The code for this
> transformation is also attached.
> * Once more than 11 such transformations are applied the Catalyst optimizer
> freezes on optimizing the execution plan
> {code:scala}
> package za.co.absa.spark.app
> import org.apache.spark.sql._
> import org.apache.spark.sql.functions._
> object SparkApp1Issue {
> // A sample data for a dataframe with nested structs
> val sample =
> """
> |{
> | "strings": {
> |"simple": "Culpa repellat nesciunt accusantium",
> |"all_random": "DESebo8d%fL9sX@AzVin",
> |"whitespaces": "qbbl"
> | },
> | "numerics": {
> |"small_positive": 722,
> |"small_negative": -660,
> |"big_positive": 669223368251997,
> |"big_negative": -161176863305841,
> |"zero": 0
> | }
> |}
> """.stripMargin ::
> """{
> | "strings": {
> |"simple": "Accusamus quia vel deleniti",
> |"all_random": "rY*KS]jPBpa[",
> |"whitespaces": " t e t rp z p"
> | },
> | "numerics": {
> |"small_positive": 268,
> |"small_negative": -134,
> |"big_positive": 768990048149640,
> |"big_negative": -684718954884696,
> |"zero": 0
> | }
> |}
> |""".stripMargin ::
> """{
> | "strings": {
> |"simple": "Quia numquam deserunt delectus rem est",
> |"all_random": "GmRdQlE4Avn1hSlVPAH",
> |"whitespaces": " c sayv drf "
> | },
> | "numerics": {
> |"small_positive": 909,
> |"small_negative": -363,
> |"big_positive": 592517494751902,
> |"big_negative": -703224505589638,
> |"zero": 0
> | }
> |}
> |""".stripMargin :: Nil
> /**
> * This Spark Job demonstrates an issue of execution plan freezing when
> there are a lot of projections
> * involving nested structs in an execution plan.
> *
> * The example works as follows:
> * - A small dataframe is created from a JSON example above
> * - A nested withColumn map transformation is used to apply a
> transformation on a struct field and create
> * a new struct field.
> * - Once more than 11 such transformations are applied the Catalyst
> optimizer freezes on optimizing
> * the execution plan
> */
> def main(args: Array[String]): Unit = {
> val sparkBuilder = SparkSession.builder().appName("Nested Projections
> Issue")
> val spark = sparkBuilder
> .master("local[4]")
> .getOrCreate()
> import spark.implicits._
> import za.co.absa.spark.utils.NestedOps.DataSetWrapper
> val df = spark.read.json(sample.toDS)
> // Apply several uppercase and negation transformations
> val dfOutput = df
> .nestedWithColumnMap("strings.simple", "strings.uppercase1", c =>
> upper(c))
> .nestedWithColumnMap("strings.all_random", "strings.uppercase2", c =>
> upper(c))
> .nestedWithColumnMap("strings.whitespaces", "strings.uppercase3", c =>
> upper(c))
> .nestedWithColumnMap("numerics.small_positive", "numerics.num1", c =>
> -c)
> .nestedWithColumnMap("numerics.small_negative",
