[Jmol-users] jmol and overlay data
Hi jmol users, I got the following visualization problem: 2 mol files: file A and file B. Plus i have an assignment (superposition) of atoms in file A that correspond to atoms in file B. Can you think of anything inside jmol that helps me to visualize this abstract superposition mapping? Many thanks in advance! raphael - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Jmol application freezing
Dear all I've been doing some testing regarding the problem where Jmol application freezes after a few changes in the default language. Apparently it's a memory matter. Every time the language is changed javaw uses more 6 to 15 MB. This happen with every language change until all resources are consumed. I hope this is not a java problem and a fix can be found. Regards Sérgio -- Dr. Sérgio Ceroni da Silva Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul Av. Bento Gonçalves, 9500 - Prédio 43421 - Campus do Vale - Caixa Postal 15005 Porto Alegre, RS - Brasil - 91501-970 == Tel.: +55 (51) 3308-6091 | Fax: +55 (51) 3308-7309 http://www6.ufrgs.br/bioquimica - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol application freezing
Sérgio Ceroni da Silva wrote: Dear all I've been doing some testing regarding the problem where Jmol application freezes after a few changes in the default language. Apparently it's a memory matter. Every time the language is changed javaw uses more 6 to 15 MB. This happen with every language change until all resources are consumed. I hope this is not a java problem and a fix can be found. Regards Sérgio This is a Jmol problem, but I am not experienced enough to solve it. Language switching is not intended to be done more than once or twice in a single Jmol run. If you have to switch back and forth among languages, consider restarting Jmol. That's just the way it is for now. Perhaps someone knows how to track down the memory leak associated with this; I tried for some time, and I give up. The viewer is not finalizing upon creation of a new one, which is what language switching involves. I do not know how to fix that. Bob - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Animation: pause/resume, and unwanted frame skipping
At 6/7/2007, Angel Herraez wrote: I have two buttons that do anim on and anim off. The problem is that although anim off freezes the animation at its current position (or close to it), anim on starts over from frame 1. One wants to stop the animation at a specific point, then resume it from that point. What are the best commands to achieve this? If I remember corectly, you need anim play or anim resume instead of anim on. Anim on always starts from the beninning. I wrote a testing page that may be useful for you, Eric, at http://biomodel.uah.es/Jmol/multimodel/ Yes, Angel, thanks, your suggestion works. anim play or anim resume starts animation (even for the first time) and resumes from the current model after anim stop. In contrast, anim on restarts from the first frame. -Eric - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
