Re: [Jmol-users] using atom expressions in set labelgroup or set labelfront

[Angel Herraez]

Thanks, Bob.

It's not doing what I was imagining, though.

set labelGroup on {44-58};

So the atom expression says which atoms the label setting will be 
applied to, and not which atoms the label will keep in front of?

(I am trying to label protein helices with a label that stays in 
front on the helix stretch, not hidden by other residue in that same 
stretch but hidden if another helix comes in front)



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[Jmol-users] [Fwd: Re: [Jmol-developers] measurements: 3 atoms reported in console instead of 2]

[Bob Hanson]

 Original Message 
Subject:Re: [Jmol-developers] measurements: 3 atoms reported in 
console instead of 2
Date:   Mon, 21 Jul 2008 09:56:17 -0500
From:   Bob Hanson <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
References: <[EMAIL PROTECTED]>



That should be fixed for 11.5.49, now available in 
http://chemapps.stolaf.edu/jmol/docs/examples-11

This release also involves a compiler rewrite, so please be on the alert 
for commands misbehaving. My script testing (involving several thousand 
lines) showed no problems.

Bob


Angel Herráez wrote:

>Jmol 11.5.47
>Not sure if this is significant, but I'm seeing a strange report in the 
>console when I make a 
>distance measurement using the mouse: rather than two atoms, three are reported
>
>Example:
>
>[GLY]79.O #374 16.525 32.072998 40.378998
>[SER]83.OG #399 17.914999 35.779 37.742
>measureCompleted: [[LEU]33.C #3, [GLY]79.O #374, [SER]83.OG #399, 0.476 nm]
>
>then
>
>[ASP]81.OD2 #388 20.474998 33.724003 39.932
>[ASP]81.O #384 19.554998 36.477 42.649998
>measureCompleted: [[LEU]33.C #3, [ASP]81.OD2 #388, [ASP]81.O #384, 0.398 nm]
>
>
>-
>This SF.Net email is sponsored by the Moblin Your Move Developer's challenge
>Build the coolest Linux based applications with Moblin SDK & win great prizes
>Grand prize is a trip for two to an Open Source event anywhere in the world
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>Jmol-developers mailing list
>[EMAIL PROTECTED]
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>  
>


-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900





-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900



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