Re: [Jmol-users] Color group not symmetry?
Dear Eric, Have you tried color monomer instead of color group ? That could do it. It works as you describe for interrupted chains, so maybe too for your situation -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Color group not symmetry?
Dear Bob, color monomer is not what I want. It colors the 3 segments of chain A each blue to red, separately (3 blue ends, 3 red ends). I want those three segments to be colored in a single blue to red sequence for all 3 (one blue end, one red end), just as color group does for the asymmetric unit. And the same-as-chain-a color-to-sequence-number mapping for all symmetry copy fragments. Eric At 7/13/12, you wrote: Dear Eric, Have you tried color monomer instead of color group ? That could do it. It works as you describe for interrupted chains, so maybe too for your situation -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Model Selection
I use the following script to select and hide one of two models in a window:
k = {*}.atomIndex.max + 1;t = {*}.atomIndex.min;select within(branch,
{atomIndex = k}, {atomIndex=t}); hide selected
Is there a way to run this in a loop of frames and apply it to frames based on
frame number i:
if (i == 1){k = {*}.atomIndex.max + 1;t = {*}.atomIndex.min;select
within(branch, {atomIndex = k}, {atomIndex=t}); hide selected}
In other words, in a given frame, can i be incorporated into the expression to
take the place of *?
I can make it work for a specific case - e.g.:
k = {1.2}.atomIndex.max + 1;t = {1.2}.atomIndex.min;select within(branch,
{atomIndex = k}, {atomIndex=t}); hide selected
But I don't know how to incorporate the frame index i into the expression.
Otis
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Re: [Jmol-users] Model Selection
Otis,
maybe { model=i }
?
e.g. this works:
print {model=2}.atomindex.min
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Re: [Jmol-users] Model Selection
Angel,
Bingo! That works.
Thanks
Otis
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Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jul 13, 2012, at 2:51 PM, Angel Herráez wrote:
Otis,
maybe { model=i }
?
e.g. this works:
print {model=2}.atomindex.min
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