Re: [Jmol-users] Default mouse behaviour with 13.2 and 13.3?
definitely fixed that No? On Mon, Aug 26, 2013 at 4:23 AM, Rzepa Henry wrote: > I notice that when Jmol13.2 or 13.3 is used (applet or app) I seem to > be getting the default mouse behaviour to be spin about Z-axis, and this is > modified by the option key to track movement of mouse (about any axis) (on > OS X). It used to be the reverse, ie default behaviour was the latter, not > the former? > > Is this just me, or has the default mouse behaviour changed? > > Might it be possible to set the default behaviour for at least the applet? > > > -- > Introducing Performance Central, a new site from SourceForge and > AppDynamics. Performance Central is your source for news, insights, > analysis and resources for efficient Application Performance Management. > Visit us today! > http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Help please (Tiqing Liu)
Sorry, Tiqing, but I do not see what the problem is. The proteins in those two
pages
>
http://bdb4.ucsd.edu/bind/jmol_pdb.jsp?pdbid=1GSI&monomerid=50332929
&polymerid=p5494&seq=100&title=pound34Thymidylate%20kinasepou
nd34%20AND%20pound34CHEMBL394429pound34
and
> http://bdb4.ucsd.edu/bind/surflex.jsp?PDB=1GSI&HET=TMP
look similar to me.
What is the defect you are seeing?
Also, as I said in my former message, "select model=1.1" is OK, but "select
model=3" does not work. You need "select 3.0" or "select file=3" to select all
3 models in that file. Maybe that is the origin of the problem.
Try to change to:
var jmolcmds = [ "load http://bdb4.ucsd.edu${hmap.url}.pdb";,
"set appendNew true",
"load APPEND http://bdb4.ucsd.edu${hmap.url}_ligand0.mol2";,
"load APPEND http://bdb4.ucsd.edu${hmap.url}-results.mol2";,
"set frank off",
"model 0",
"select 1.1; spacefill off; cpk off; wireframe off; cartoon; color cartoon
translucent",
"select 2.1; wireframe 80; spacefill 0.35; center hetero; color translucent;
zoom 200",
"select 3.0; wireframe off; cpk off; spacefill off",
"background white",
"display all"
];
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[Jmol-users] Default mouse behaviour with 13.2 and 13.3?
I notice that when Jmol13.2 or 13.3 is used (applet or app) I seem to be getting the default mouse behaviour to be spin about Z-axis, and this is modified by the option key to track movement of mouse (about any axis) (on OS X). It used to be the reverse, ie default behaviour was the latter, not the former? Is this just me, or has the default mouse behaviour changed? Might it be possible to set the default behaviour for at least the applet? signature.asc Description: Message signed with OpenPGP using GPGMail -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] A problem with mo commands
Dear Jmol Users, "mo" commands display the MO using not the same characteristics as the currently displayed one. The next commands cause a problem. "mo next", "mo previous", "mo homo" and "mo lumo" In the older version, it displays the MO using the same characteristics as the currently displayed one. Please see JSmol revision 7/28/2013 http://www3.u-toyama.ac.jp/kihara/cc/jsmoview/a1-2-1/a0001.htm Jmol 12.0 http://www3.u-toyama.ac.jp/kihara/cc/moview/a1-2-1/a0001.htm -- Hiroshi Kihara Information Technology Center University of Toyama 3190 Gofuku, Toyama, Toyama Japan -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
