Re: [Jmol-users] local testing ready iteration 1,203,304,440
I have just had time to see if the applets load from your site. Java and signed load fine. HTML5 only loads if the error console is open. Error comments are as follows: [Error] java.lang.NullPointerException (anonymous function) (core.z.js, line 398) (anonymous function) (core.z.js, line 2236) (anonymous function) (core.z.js, line 2228) (anonymous function) (core.z.js, line 2205) instantialize (JSmol.min.js, line 344) (anonymous function) (core.z.js, line 2204) (anonymous function) (core.z.js, line 2253) (anonymous function) (core.z.js, line 937) (anonymous function) (core.z.js, line 926) (anonymous function) (core.z.js, line 917) instantialize (JSmol.min.js, line 344) (anonymous function) (core.z.js, line 913) (anonymous function) (core.z.js, line 506) (anonymous function) (core.z.js, line 505) (anonymous function) (core.z.js, line 503) instantialize (JSmol.min.js, line 344) (anonymous function) (core.z.js, line 503) __startAppletJS (JSmol.min.js, line 258) __nextExecution (JSmol.min.js, line 263) On Nov 27, 2013, at 7:53 PM, Robert Hanson wrote: > OK --- that's ready. > > tests: > > for local downloading: > > http://chemapps.stolaf.edu/jmol/jsmol/jmol-13.3.9_2013.11.27d.zip > > for hosted site checking: > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > > I await your word > > Bob > > > > Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
OK --- that's ready. On Wed, Nov 27, 2013 at 6:00 PM, Robert Hanson wrote: > Can't believe I did that. Hang on > > > On Wed, Nov 27, 2013 at 5:55 PM, Robert Hanson wrote: > >> OK, here we go... Thank you all for the testing. >> >> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27d.zip >> >> Should fix the Bond/BondSet issue. >> Should fix the mouse wheeling issues. >> Should fix the menu language issue. (should start up in your language) >> >> I have no idea about the infinite loop problem. >> >> >> (optimistic) browser expectations : >> >> file:// ?_USE=HTML5 file:// ?_USE=JAVA file:// ?_USE=SIGNED >> http://?_USE=HTML5 >> http:// ?_USE=JAVA http:// ?_USE=SIGNED FF ok sandboxed ok ok ok ok >> Safari no (no AJAX) sandboxed ok ok(slow) ok ok Chrome no (no AJAX) >> sandboxed ok ok ok ok >> >> tests: >> >> for local downloading: >> >> http://chemapps.stolaf.edu/jmol/jsmol/jmol-13.3.9_2013.11.27d.zip >> >> for hosted site checking: >> >> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm >> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA >> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED >> >> I await your word >> >> Bob >> >> >> >> >> On Wed, Nov 27, 2013 at 4:36 PM, Robert Hanson wrote: >> >>> I see. OK, well, in this next update that messaging is still in, so you >>> can check Java or HTML5. >>> >>> >>> On Wed, Nov 27, 2013 at 4:04 PM, Rolf Huehne wrote: >>> Am 27.11.2013 21:50, schrieb Robert Hanson: > could be. Might have to leave it that way. HTML5 works OK? or not? > Sorry, I mixed up the Java and HTML5 versions here. The Click-activation of zooming with the mousewheel works only with Java and not with HTML5. So also on Win7 there is no mousewheel zooming with Chrome 31. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >>> >>> -- >>> Robert M. Hanson >>> Larson-Anderson Professor of Chemistry >>> St. Olaf College >>> Northfield, MN >>> http://www.stolaf.edu/people/hansonr >>> >>> >>> If nature does not answer first what we want, >>> it is better to take what answer we get. >>> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>> >>> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listi
Re: [Jmol-users] local testing ready iteration 1,203,304,440
Can't believe I did that. Hang on On Wed, Nov 27, 2013 at 5:55 PM, Robert Hanson wrote: > OK, here we go... Thank you all for the testing. > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27d.zip > > Should fix the Bond/BondSet issue. > Should fix the mouse wheeling issues. > Should fix the menu language issue. (should start up in your language) > > I have no idea about the infinite loop problem. > > > (optimistic) browser expectations : > > file:// ?_USE=HTML5 file:// ?_USE=JAVA file:// ?_USE=SIGNED > http://?_USE=HTML5 > http:// ?_USE=JAVA http:// ?_USE=SIGNED FF ok sandboxed ok ok ok ok > Safari no (no AJAX) sandboxed ok ok(slow) ok ok Chrome no (no AJAX) > sandboxed ok ok ok ok > > tests: > > for local downloading: > > http://chemapps.stolaf.edu/jmol/jsmol/jmol-13.3.9_2013.11.27d.zip > > for hosted site checking: > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > > I await your word > > Bob > > > > > On Wed, Nov 27, 2013 at 4:36 PM, Robert Hanson wrote: > >> I see. OK, well, in this next update that messaging is still in, so you >> can check Java or HTML5. >> >> >> On Wed, Nov 27, 2013 at 4:04 PM, Rolf Huehne wrote: >> >>> Am 27.11.2013 21:50, schrieb Robert Hanson: >>> > could be. Might have to leave it that way. HTML5 works OK? or not? >>> > >>> Sorry, I mixed up the Java and HTML5 versions here. >>> The Click-activation of zooming with the mousewheel works only with Java >>> and not with HTML5. So also on Win7 there is no mousewheel zooming with >>> Chrome 31. >>> >>> Regards, >>> Rolf >>> >>> -- >>> >>> Rolf Huehne >>> Postdoc >>> >>> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) >>> Beutenbergstrasse 11 >>> 07745 Jena, Germany >>> >>> Phone: +49 3641 65 6205 >>> Fax: +49 3641 65 6210 >>> E-Mail: rhue...@fli-leibniz.de >>> Website: http://www.fli-leibniz.de >>> >>>Scientific Director: Prof. Dr. K. Lenhard Rudolph >>> Head of Administration: Dr. Daniele Barthel >>> Chairman of Board of Trustees: Dennys Klein >>> >>> VAT No: DE 153 925 464 >>> Register of Associations: No. 296, Amtsgericht Jena >>> Tax Number: 162/141/08228 >>> >>> >>> >>> -- >>> Rapidly troubleshoot problems before they affect your business. Most IT >>> organizations don't have a clear picture of how application performance >>> affects their revenue. With AppDynamics, you get 100% visibility into >>> your >>> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of >>> AppDynamics Pro! >>> >>> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >>> ___ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
OK, here we go... Thank you all for the testing. http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27d.zip Should fix the Bond/BondSet issue. Should fix the mouse wheeling issues. Should fix the menu language issue. (should start up in your language) I have no idea about the infinite loop problem. (optimistic) browser expectations : file:// ?_USE=HTML5 file:// ?_USE=JAVA file:// ?_USE=SIGNED http://?_USE=HTML5 http:// ?_USE=JAVA http:// ?_USE=SIGNED FF ok sandboxed ok ok ok ok Safari no (no AJAX) sandboxed ok ok(slow) ok ok Chrome no (no AJAX) sandboxed ok ok ok ok tests: for local downloading: http://chemapps.stolaf.edu/jmol/jsmol/jmol-13.3.9_2013.11.27d.zip for hosted site checking: http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED I await your word Bob On Wed, Nov 27, 2013 at 4:36 PM, Robert Hanson wrote: > I see. OK, well, in this next update that messaging is still in, so you > can check Java or HTML5. > > > On Wed, Nov 27, 2013 at 4:04 PM, Rolf Huehne wrote: > >> Am 27.11.2013 21:50, schrieb Robert Hanson: >> > could be. Might have to leave it that way. HTML5 works OK? or not? >> > >> Sorry, I mixed up the Java and HTML5 versions here. >> The Click-activation of zooming with the mousewheel works only with Java >> and not with HTML5. So also on Win7 there is no mousewheel zooming with >> Chrome 31. >> >> Regards, >> Rolf >> >> -- >> >> Rolf Huehne >> Postdoc >> >> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) >> Beutenbergstrasse 11 >> 07745 Jena, Germany >> >> Phone: +49 3641 65 6205 >> Fax: +49 3641 65 6210 >> E-Mail: rhue...@fli-leibniz.de >> Website: http://www.fli-leibniz.de >> >>Scientific Director: Prof. Dr. K. Lenhard Rudolph >> Head of Administration: Dr. Daniele Barthel >> Chairman of Board of Trustees: Dennys Klein >> >> VAT No: DE 153 925 464 >> Register of Associations: No. 296, Amtsgericht Jena >> Tax Number: 162/141/08228 >> >> >> >> -- >> Rapidly troubleshoot problems before they affect your business. Most IT >> organizations don't have a clear picture of how application performance >> affects their revenue. With AppDynamics, you get 100% visibility into your >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics >> Pro! >> >> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] JSmol Problems
that upload did not address that issue. Fixed in next On Wed, Nov 27, 2013 at 4:25 PM, Philip Bays wrote: > Bob: > The bondset issue is still there when running locally from the ….27 > directory. > > > > On Nov 27, 2013, at 4:44 PM, Robert Hanson wrote: > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip > > fixes the bondset problem. > > How do I get to your site to test this? > > > > > On Wed, Nov 27, 2013 at 2:16 PM, Otis Rothenberger > wrote: > >> I apologize in advance for starting a new thread here, but I'm getting >> really confused on issues. My focus here is this note from Bob this morning. >> >> From Bob... >> OK. Tomorrow is Mac-testing day for me. Tell me your woes >> >> Please do try the latest, at >> >> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip >> >> End from Bob >> >> With Mac Chrome, our model kit loads, but there is considerable whining >> during the load about waiting for the ISU server. Once loaded, most script >> links seem dead. I cannot even bring up the console or check the Jmol >> right-click menu. >> >> With Safari, the model does not load. I get the same error that Phil is >> getting about a missing BondSet.js file >> >> Otis >> >> >> -- >> Rapidly troubleshoot problems before they affect your business. Most IT >> organizations don't have a clear picture of how application performance >> affects their revenue. With AppDynamics, you get 100% visibility into your >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics >> Pro! >> >> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > Philip Bays > Emeritus Professor of Chemistry > Saint Mary's College > Notre Dame, IN 46556 > pb...@saintmarys.edu > > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] JSmol Problems
OK, jmol-13.3.9_2013.11.27 is uploaded. The right click menu now comes up, but it's reporting jmol-13.3.9_2013.11.26 - Chrome, Safari, and FF. Cache cleared on all to the extreme. Safari still does not load, but... It will load if I have the error console up - no errors reported. With Safari, Chrome, and FF, scripting is broken or breaks randomly. If I see any consistency, it appears that model editing and moving is a problem. Having said this, simply transferring a JSME SMILES for loading breaks. I just can't target the main issue. Otis On Wed, Nov 27, 2013 at 5:24 PM, Otis Rothenberger wrote: > Sorry about that: > > http://chemistry.illinoisstate.edu/osrothen/JSmolVMK.htm > > Also a new interface that we're developing: > > http://chemistry.illinoisstate.edu/osrothen/JSmolVMK2.htm > > Chrome is now working on some loads, but it breaks after some playing > around. Also check out the inability to bring up the right click menu. This > all seems random. > > Safari is not loading - except for one time. Again random... > > I think I'm running jmol-13.3.9_2013.11.26. I missed the 11.27 note. I'll > update now. It will take a few minutes to upload. > > Otis > > > > On Wed, Nov 27, 2013 at 4:44 PM, Robert Hanson wrote: > >> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip >> >> fixes the bondset problem. >> >> How do I get to your site to test this? >> >> >> >> >> On Wed, Nov 27, 2013 at 2:16 PM, Otis Rothenberger > > wrote: >> >>> I apologize in advance for starting a new thread here, but I'm getting >>> really confused on issues. My focus here is this note from Bob this morning. >>> >>> From Bob... >>> OK. Tomorrow is Mac-testing day for me. Tell me your woes >>> >>> Please do try the latest, at >>> >>> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip >>> >>> End from Bob >>> >>> With Mac Chrome, our model kit loads, but there is considerable whining >>> during the load about waiting for the ISU server. Once loaded, most script >>> links seem dead. I cannot even bring up the console or check the Jmol >>> right-click menu. >>> >>> With Safari, the model does not load. I get the same error that Phil is >>> getting about a missing BondSet.js file >>> >>> Otis >>> >>> >>> -- >>> Rapidly troubleshoot problems before they affect your business. Most IT >>> organizations don't have a clear picture of how application performance >>> affects their revenue. With AppDynamics, you get 100% visibility into >>> your >>> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of >>> AppDynamics Pro! >>> >>> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >>> ___ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> >> >> -- >> Rapidly troubleshoot problems before they affect your business. Most IT >> organizations don't have a clear picture of how application performance >> affects their revenue. With AppDynamics, you get 100% visibility into your >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics >> Pro! >> >> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
I see. OK, well, in this next update that messaging is still in, so you can check Java or HTML5. On Wed, Nov 27, 2013 at 4:04 PM, Rolf Huehne wrote: > Am 27.11.2013 21:50, schrieb Robert Hanson: > > could be. Might have to leave it that way. HTML5 works OK? or not? > > > Sorry, I mixed up the Java and HTML5 versions here. > The Click-activation of zooming with the mousewheel works only with Java > and not with HTML5. So also on Win7 there is no mousewheel zooming with > Chrome 31. > > Regards, > Rolf > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] JSmol Problems
Bob: The bondset issue is still there when running locally from the ….27 directory. On Nov 27, 2013, at 4:44 PM, Robert Hanson wrote: > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip > > fixes the bondset problem. > > How do I get to your site to test this? > > > > > On Wed, Nov 27, 2013 at 2:16 PM, Otis Rothenberger > wrote: > I apologize in advance for starting a new thread here, but I'm getting really > confused on issues. My focus here is this note from Bob this morning. > > From Bob... > OK. Tomorrow is Mac-testing day for me. Tell me your woes > > Please do try the latest, at > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip > > End from Bob > > With Mac Chrome, our model kit loads, but there is considerable whining > during the load about waiting for the ISU server. Once loaded, most script > links seem dead. I cannot even bring up the console or check the Jmol > right-click menu. > > With Safari, the model does not load. I get the same error that Phil is > getting about a missing BondSet.js file > > Otis > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] JSmol Problems
Sorry about that: http://chemistry.illinoisstate.edu/osrothen/JSmolVMK.htm Also a new interface that we're developing: http://chemistry.illinoisstate.edu/osrothen/JSmolVMK2.htm Chrome is now working on some loads, but it breaks after some playing around. Also check out the inability to bring up the right click menu. This all seems random. Safari is not loading - except for one time. Again random... I think I'm running jmol-13.3.9_2013.11.26. I missed the 11.27 note. I'll update now. It will take a few minutes to upload. Otis On Wed, Nov 27, 2013 at 4:44 PM, Robert Hanson wrote: > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip > > fixes the bondset problem. > > How do I get to your site to test this? > > > > > On Wed, Nov 27, 2013 at 2:16 PM, Otis Rothenberger > wrote: > >> I apologize in advance for starting a new thread here, but I'm getting >> really confused on issues. My focus here is this note from Bob this morning. >> >> From Bob... >> OK. Tomorrow is Mac-testing day for me. Tell me your woes >> >> Please do try the latest, at >> >> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip >> >> End from Bob >> >> With Mac Chrome, our model kit loads, but there is considerable whining >> during the load about waiting for the ISU server. Once loaded, most script >> links seem dead. I cannot even bring up the console or check the Jmol >> right-click menu. >> >> With Safari, the model does not load. I get the same error that Phil is >> getting about a missing BondSet.js file >> >> Otis >> >> >> -- >> Rapidly troubleshoot problems before they affect your business. Most IT >> organizations don't have a clear picture of how application performance >> affects their revenue. With AppDynamics, you get 100% visibility into your >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics >> Pro! >> >> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
Am 27.11.2013 21:50, schrieb Robert Hanson: > could be. Might have to leave it that way. HTML5 works OK? or not? > Sorry, I mixed up the Java and HTML5 versions here. The Click-activation of zooming with the mousewheel works only with Java and not with HTML5. So also on Win7 there is no mousewheel zooming with Chrome 31. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] JSmol Problems
http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip fixes the bondset problem. How do I get to your site to test this? On Wed, Nov 27, 2013 at 2:16 PM, Otis Rothenberger wrote: > I apologize in advance for starting a new thread here, but I'm getting > really confused on issues. My focus here is this note from Bob this morning. > > From Bob... > OK. Tomorrow is Mac-testing day for me. Tell me your woes > > Please do try the latest, at > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip > > End from Bob > > With Mac Chrome, our model kit loads, but there is considerable whining > during the load about waiting for the ISU server. Once loaded, most script > links seem dead. I cannot even bring up the console or check the Jmol > right-click menu. > > With Safari, the model does not load. I get the same error that Phil is > getting about a missing BondSet.js file > > Otis > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] OS X Mavericks, and Jmol using local files
But this procedure is specific for OSX 9. On Nov 27, 2013, at 3:42 PM, Robert Hanson wrote: > > > > On Mon, Oct 28, 2013 at 3:48 AM, Rzepa, Henry S > wrote: > The ability to run Jmol using local data is useful for testing (and in my > case from giving demos/talks from the laptop). Finding out how to allow this > is getting more fun with each release of both Java and the OS; I here offer > my recipe for OS X Mavericks: > > 1. Open a local file using Safari (a file which say invokes the Jmol applet) > 2. In Safari/Preferences/Security/Internet plug-ins, check allow, and then > manage Website settings > 3. Select Java as the plug-in, and "currently open website" should declare > “Local documents”. You should select "Allow always". If you do not have a > local document open at the time, this option will not appear. > > I have a URL file:///Users/hansonr/ open, but there is no "currently > open website" entry. Sure sounds like a good idea, though OS X 10.8.4 > Safari 6.0.5 > > Bob > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users J. Philip Bays Emeritus Professor of Chemistry Department of Chemistry and Physics Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
could be. Might have to leave it that way. HTML5 works OK? or not? On Wed, Nov 27, 2013 at 2:32 PM, Rolf Huehne wrote: > Am 27.11.2013 21:10, schrieb Robert Hanson: > > Restart your browser and try that again -- this time open the Jmol > > console and issue > > > > set loglevel 6 > > > > from there. > > > The output looks like this: > - > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 4 16 LEFT+down > mouse action: 5 16 LEFT+up > mouse action: 2 16 LEFT+click > mouse action: 4 4 RIGHT+down > mouse action: 5 4 RIGHT+up > mouse action: 2 4 RIGHT+click > mouse action: 4 16 LEFT+down > mouse action: 5 16 LEFT+up > mouse action: 2 16 LEFT+click > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > mouse action: 3 32 WHEEL > --- > > When the second set of mouse wheel events were reported suddenly zooming > with the wheel worked. > So I reloaded the page and a single left-click was sufficient to > activate zooming with the mousewheel. > But now I am working with Chrome on Win7 at home. I'm quite sure that > I mixed my zooming attempts with rotations at work so I should have > noticed this. I will check tomorrow. > > Regards, > Rolf > > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] OS X Mavericks, and Jmol using local files
On Mon, Oct 28, 2013 at 3:48 AM, Rzepa, Henry S wrote: > The ability to run Jmol using local data is useful for testing (and in my > case from giving demos/talks from the laptop). Finding out how to allow > this is getting more fun with each release of both Java and the OS; I > here offer my recipe for OS X Mavericks: > > 1. Open a local file using Safari (a file which say invokes the Jmol > applet) > 2. In Safari/Preferences/Security/Internet plug-ins, check allow, and > then manage Website settings > 3. Select Java as the plug-in, and "currently open website" should > declare “Local documents”. You should select "Allow always". If you do > not have a local document open at the time, this option will not appear. > I have a URL file:///Users/hansonr/ open, but there is no "currently open website" entry. Sure sounds like a good idea, though OS X 10.8.4 Safari 6.0.5 Bob -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
Am 27.11.2013 21:10, schrieb Robert Hanson: > Restart your browser and try that again -- this time open the Jmol > console and issue > > set loglevel 6 > > from there. > The output looks like this: - mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 4 16 LEFT+down mouse action: 5 16 LEFT+up mouse action: 2 16 LEFT+click mouse action: 4 4 RIGHT+down mouse action: 5 4 RIGHT+up mouse action: 2 4 RIGHT+click mouse action: 4 16 LEFT+down mouse action: 5 16 LEFT+up mouse action: 2 16 LEFT+click mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL mouse action: 3 32 WHEEL --- When the second set of mouse wheel events were reported suddenly zooming with the wheel worked. So I reloaded the page and a single left-click was sufficient to activate zooming with the mousewheel. But now I am working with Chrome on Win7 at home. I'm quite sure that I mixed my zooming attempts with rotations at work so I should have noticed this. I will check tomorrow. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] JSmol Problems
I apologize in advance for starting a new thread here, but I'm getting really confused on issues. My focus here is this note from Bob this morning. >From Bob... OK. Tomorrow is Mac-testing day for me. Tell me your woes Please do try the latest, at http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip End from Bob With Mac Chrome, our model kit loads, but there is considerable whining during the load about waiting for the ISU server. Once loaded, most script links seem dead. I cannot even bring up the console or check the Jmol right-click menu. With Safari, the model does not load. I get the same error that Phil is getting about a missing BondSet.js file Otis -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
Restart your browser and try that again -- this time open the Jmol console and issue set loglevel 6 from there. On Wed, Nov 27, 2013 at 12:48 PM, Rolf Huehne wrote: > On 11/27/2013 07:37 PM, Robert Hanson wrote: > > better: > > > > > http://jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=108l&APPLET=unsigned&JMOLJAR=http://chemapps.stolaf.edu/jmol/jsmol/java/JmolAppletSigned.jar > > > > 1) Enter > > > > set loglevel 6 > > > > in your command box. > > > > 2) run the mouse and wheel > > > > 3) check the Java console. It should report something like: > > > > > I can't do that because the IcedTea Java plugin doesn't provide a Java > console. > (I guess you have noticed: with Java the mousewheel works with Chromium.) > > Regards, > Rolf > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 230296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
Am 27.11.2013 20:35, schrieb Robert Hanson: > I especially appreciate this message: > > ERROR de l'script: TypeError: Cannot call method 'dispose' of null > --<<-0 null isPop false 317 > Command 0 > language = "ca" ##Catalan; > Loading language resource http://chemapps.stolaf.edu/jmol/jsmol/idioma/ca.po > FileManager opening 1 http://chemapps.stolaf.edu/jmol/jsmol/idioma/ca.po > 542 translations loaded > > Note that the console has changed languages, and the error messages are > translated, so just not the menu. > > So it's a menu issue specifically. Some sort of jQuery error, I think. > I will check on that -- I can reproduce > the error in Chrome on my end. > > Are you not seeing the menu in German right at the beginning, Rolf? > Should be.. > No, because the operating system of my computer at work is set to English. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
I especially appreciate this message: ERROR de l'script: TypeError: Cannot call method 'dispose' of null --<<-0 null isPop false 317 Command 0 language = "ca" ##Catalan; Loading language resource http://chemapps.stolaf.edu/jmol/jsmol/idioma/ca.po FileManager opening 1 http://chemapps.stolaf.edu/jmol/jsmol/idioma/ca.po 542 translations loaded Note that the console has changed languages, and the error messages are translated, so just not the menu. So it's a menu issue specifically. Some sort of jQuery error, I think. I will check on that -- I can reproduce the error in Chrome on my end. Are you not seeing the menu in German right at the beginning, Rolf? Should be.. On Wed, Nov 27, 2013 at 12:50 PM, Rolf Huehne wrote: > On 11/27/2013 06:42 PM, Robert Hanson wrote: > > Might be a cache problem. > > > > > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po > > > > Should be: > > > > > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/idioma/de.po > > > > so there's an updating issue there. > > > In the 'jmol-13.3.8/jsmol' folder there is no 'idioma' folder. > > I have installed now the latest 13.3.9 version > (http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip). > > It contains an 'idioma' folder and the Javascript error message is now > gone. But the language change still doesn't work and the JSmol error > message is still there: > - > script ERROR: TypeError: a is null > - > > At your server the language change works, but the same Jmol error > message is shown in the console. Maybe the error message is related to > the problem that the check mark is not removed from the previous > language if a new language is chosen. > > Regards, > Rolf > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 230296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
On 11/27/2013 06:42 PM, Robert Hanson wrote: > Might be a cache problem. > > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po > > Should be: > > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/idioma/de.po > > so there's an updating issue there. > In the 'jmol-13.3.8/jsmol' folder there is no 'idioma' folder. I have installed now the latest 13.3.9 version (http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip). It contains an 'idioma' folder and the Javascript error message is now gone. But the language change still doesn't work and the JSmol error message is still there: - script ERROR: TypeError: a is null - At your server the language change works, but the same Jmol error message is shown in the console. Maybe the error message is related to the problem that the check mark is not removed from the previous language if a new language is chosen. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
On 11/27/2013 07:37 PM, Robert Hanson wrote: > better: > > http://jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=108l&APPLET=unsigned&JMOLJAR=http://chemapps.stolaf.edu/jmol/jsmol/java/JmolAppletSigned.jar > > 1) Enter > > set loglevel 6 > > in your command box. > > 2) run the mouse and wheel > > 3) check the Java console. It should report something like: > > I can't do that because the IcedTea Java plugin doesn't provide a Java console. (I guess you have noticed: with Java the mousewheel works with Chromium.) Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
better: http://jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=108l&APPLET=unsigned&JMOLJAR=http://chemapps.stolaf.edu/jmol/jsmol/java/JmolAppletSigned.jar 1) Enter set loglevel 6 in your command box. 2) run the mouse and wheel 3) check the Java console. It should report something like: mouse action: LEFT+down LEFT+down mouse action: LEFT+drag mouse action: LEFT+drag mouse action: LEFT+drag mouse action: LEFT+drag mouse action: LEFT+up LEFT+up mouse action: MIDDLE+down MIDDLE+down mouse action: MIDDLE+drag mouse action: MIDDLE+drag mouse action: WHEEL mouse action: WHEEL mouse action: WHEEL mouse action: WHEEL mouse action: WHEEL mouse action: WHEEL mouse action: WHEEL mouse action: WHEEL mouse action: WHEEL mouse action: MIDDLE+up MIDDLE+up On Wed, Nov 27, 2013 at 12:20 PM, Robert Hanson wrote: > Rolf, please: > > 1) Open a Jmol console or otherwise enter the command > >set debug > > 2) run your mouse, wheel, etc. > > 3) report back what the Java console says. Should be something like: > > MIDDLE+down > MIDDLE+up > MIDDLE+down > MIDDLE+up > MIDDLE+click > MIDDLE+double+down > MIDDLE+double+up > MIDDLE+double+click > > (I guess the drags don't get reported, but that will at least let us know > if the wheel is getting picked up.) > > > > > On Wed, Nov 27, 2013 at 12:07 PM, Rolf Huehne wrote: > >> On 11/27/2013 06:13 PM, Robert Hanson wrote: >> > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip >> > >> > is ready for local-applet testing. Please do! >> > >> > hosted site testing can be done using >> > >> > http://chemapps.stolaf.edu/jmol/jsmol >> > >> > >> > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 >> > >> > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA >> > >> > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED >> > >> There is no mousewheel support (zooming) with Chromium 30 on Linux with >> HTML5 but it works with Java. With Firefox 25 the mousewheel works with >> both HTML5 and Java. >> >> Regards, >> Rolf >> >> -- >> >> Rolf Huehne >> Postdoc >> >> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) >> Beutenbergstrasse 11 >> 07745 Jena, Germany >> >> Phone: +49 3641 65 6205 >> Fax: +49 3641 65 6210 >> E-Mail: rhue...@fli-leibniz.de >> Website: http://www.fli-leibniz.de >> >>Scientific Director: Prof. Dr. K. Lenhard Rudolph >> Head of Administration: Dr. Daniele Barthel >> Chairman of Board of Trustees: Dennys Klein >> >> VAT No: DE 153 925 464 >> Register of Associations: No. 230296, Amtsgericht Jena >> Tax Number: 162/141/08228 >> >> >> >> -- >> Rapidly troubleshoot problems before they affect your business. Most IT >> organizations don't have a clear picture of how application performance >> affects their revenue. With AppDynamics, you get 100% visibility into your >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics >> Pro! >> >> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
That's what I'm trying to solve now... On Wed, Nov 27, 2013 at 12:29 PM, Rolf Huehne wrote: > On 11/27/2013 07:20 PM, Robert Hanson wrote: > > Rolf, please: > > > > 1) Open a Jmol console or otherwise enter the command > > > > set debug > > > When I do this with HTML5 I get the following error message: > - > script ERROR: RangeError: Maximum call stack size exceeded > - > > In Firefox I get a different one: > - > script ERROR: InternalError: too much recursion > - > > Regards, > Rolf > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 230296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
Also, you have the wrong version -- this is 13.3.9: http://jenalib.fli-leibniz.de/ImgLibPDB/jmol//jmol-13.3.9/jsmol/idioma/de.po On Wed, Nov 27, 2013 at 11:42 AM, Robert Hanson wrote: > Might be a cache problem. > > > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po > > Should be: > > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/idioma/de.po > > so there's an updating issue there. > > > > On Wed, Nov 27, 2013 at 11:26 AM, Rolf Huehne wrote: > >> On 11/27/2013 06:06 PM, Robert Hanson wrote: >> > Might need http:// in front of that. Or do you mean on the local file >> > system? >> > >> No, on the server. But I try to avoid absolute URLs to be able to shift >> to a different server without having to adapt anything. >> >> Adding the protocol and server name doesn't change anything. >> >> Why do you think the file was not found? >> For me the Javascript error message looks like it found the file but >> didn't like it's content. >> >> Regards, >> Rolf >> -- >> >> Rolf Huehne >> Postdoc >> >> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) >> Beutenbergstrasse 11 >> 07745 Jena, Germany >> >> Phone: +49 3641 65 6205 >> Fax: +49 3641 65 6210 >> E-Mail: rhue...@fli-leibniz.de >> Website: http://www.fli-leibniz.de >> >>Scientific Director: Prof. Dr. K. Lenhard Rudolph >> Head of Administration: Dr. Daniele Barthel >> Chairman of Board of Trustees: Dennys Klein >> >> VAT No: DE 153 925 464 >> Register of Associations: No. 230296, Amtsgericht Jena >> Tax Number: 162/141/08228 >> >> >> >> -- >> Rapidly troubleshoot problems before they affect your business. Most IT >> organizations don't have a clear picture of how application performance >> affects their revenue. With AppDynamics, you get 100% visibility into your >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics >> Pro! >> >> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
On 11/27/2013 07:20 PM, Robert Hanson wrote: > Rolf, please: > > 1) Open a Jmol console or otherwise enter the command > > set debug > When I do this with HTML5 I get the following error message: - script ERROR: RangeError: Maximum call stack size exceeded - In Firefox I get a different one: - script ERROR: InternalError: too much recursion - Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
Rolf, please: 1) Open a Jmol console or otherwise enter the command set debug 2) run your mouse, wheel, etc. 3) report back what the Java console says. Should be something like: MIDDLE+down MIDDLE+up MIDDLE+down MIDDLE+up MIDDLE+click MIDDLE+double+down MIDDLE+double+up MIDDLE+double+click (I guess the drags don't get reported, but that will at least let us know if the wheel is getting picked up.) On Wed, Nov 27, 2013 at 12:07 PM, Rolf Huehne wrote: > On 11/27/2013 06:13 PM, Robert Hanson wrote: > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip > > > > is ready for local-applet testing. Please do! > > > > hosted site testing can be done using > > > > http://chemapps.stolaf.edu/jmol/jsmol > > > > > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 > > > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > > > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > > > There is no mousewheel support (zooming) with Chromium 30 on Linux with > HTML5 but it works with Java. With Firefox 25 the mousewheel works with > both HTML5 and Java. > > Regards, > Rolf > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 230296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] local testing ready iteration 1,203,304,440
On 11/27/2013 06:13 PM, Robert Hanson wrote: > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip > > is ready for local-applet testing. Please do! > > hosted site testing can be done using > > http://chemapps.stolaf.edu/jmol/jsmol > > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > There is no mousewheel support (zooming) with Chromium 30 on Linux with HTML5 but it works with Java. With Firefox 25 the mousewheel works with both HTML5 and Java. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
Might be a cache problem. http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po Should be: http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/idioma/de.po so there's an updating issue there. On Wed, Nov 27, 2013 at 11:26 AM, Rolf Huehne wrote: > On 11/27/2013 06:06 PM, Robert Hanson wrote: > > Might need http:// in front of that. Or do you mean on the local file > > system? > > > No, on the server. But I try to avoid absolute URLs to be able to shift > to a different server without having to adapt anything. > > Adding the protocol and server name doesn't change anything. > > Why do you think the file was not found? > For me the Javascript error message looks like it found the file but > didn't like it's content. > > Regards, > Rolf > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 230296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
On 11/27/2013 06:06 PM, Robert Hanson wrote: > Might need http:// in front of that. Or do you mean on the local file > system? > No, on the server. But I try to avoid absolute URLs to be able to shift to a different server without having to adapt anything. Adding the protocol and server name doesn't change anything. Why do you think the file was not found? For me the Javascript error message looks like it found the file but didn't like it's content. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] local testing ready iteration 1,203,304,440
http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.27.zip is ready for local-applet testing. Please do! hosted site testing can be done using http://chemapps.stolaf.edu/jmol/jsmol http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED Thanks. I still have not worked on a number of issues, but this at least should solve the "Bond/BondSet" issue and a number of other errors I made yesterday. Maybe even the infinite-loop issue. Bob -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
Might need http:// in front of that. Or do you mean on the local file system? On Wed, Nov 27, 2013 at 9:29 AM, Rolf Huehne wrote: > On 11/27/2013 04:19 PM, Robert Hanson wrote: > > I can fix that. Just got the file name wrong. Probably you are indicating > > "j2s/" instead of "j2s" for Info.j2sPath, but I'll check, and it > shouldn't > > have to have that problem. > > > There is no '/' at the end. I provide a server absolute path (necessary > because the page is build from a CGI script somewhere else): >j2sPath: "/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s" > > Regards, > Rolf > > > On Wed, Nov 27, 2013 at 7:47 AM, Rolf Huehne > wrote: > > > >> Am 25.11.2013 20:05, schrieb Robert Hanson: > >>> I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the > >>> end of the week. Please send all bug fix requests as soon as possible > >>> directly to this list. > >>> > >> Switching the language doesn't work for me with the applet version > >> 13.3.8 with Firefox and Chrome on Win7 and Linux. In the application it > >> works as expected. I have tested also version 13.3.9_2013.11.25c (from > >> ZIP file 13.3.9_2013.11.26b.zip) on Linux and the results are the same > >> plus other problems (see below). > >> > >> With Java there is no Jmol error message. Since I am using the IcedTea > >> Java plugin I don't have a Java console to look for error messages > there. > >> With JSmol there is the following Javascript error message: > >> -- > >> Timestamp: 11/27/2013 01:57:36 PM > >> Error: not well-formed > >> Source File: > >> > >> > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po > >> Line: 1, Column: 2 > >> Source Code: > >> # German translation of the Jmol applet > >> --- > >> > >> and additionally this JSmol error message: > >> -- > >> script ERROR: TypeError: a is null > >> -- > >> > >> With the version from 13.3.9_2013.11.26b.zip there is another problem > >> within the 'Jena3D Viewer'. After starting the viewer the following > >> error message is shown: > >> -- > >> script ERROR: InternalError: too much recursion > >> -- > >> > >> This is triggerd by the initial Jmolscript and I could identify the > >> specific command: > >> set perspectivemodel 11 > >> > >> Besides I cannot open the popup menu in Firefox 25 and Chrome 30 on > >> Linux. Neither right-click works nor left-click on the frank. > >> > >> Regards, > >> Rolf > >> > >> -- > >> > >> Rolf Huehne > >> Postdoc > >> > >> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > >> Beutenbergstrasse 11 > >> 07745 Jena, Germany > >> > >> Phone: +49 3641 65 6205 > >> Fax: +49 3641 65 6210 > >> E-Mail: rhue...@fli-leibniz.de > >> Website: http://www.fli-leibniz.de > >> > >> Scientific Director: Prof. Dr. K. Lenhard Rudolph > >> Head of Administration: Dr. Daniele Barthel > >> Chairman of Board of Trustees: Dennys Klein > >> > >> VAT No: DE 153 925 464 > >> Register of Associations: No. 296, Amtsgericht Jena > >> Tax Number: 162/141/08228 > >> > >> > >> > >> > -- > >> Rapidly troubleshoot problems before they affect your business. Most IT > >> organizations don't have a clear picture of how application performance > >> affects their revenue. With AppDynamics, you get 100% visibility into > your > >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of > AppDynamics > >> Pro! > >> > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > >> ___ > >> Jmol-users mailing list > >> Jmol-users@lists.sourceforge.net > >> https://lists.sourceforge.net/lists/listinfo/jmol-users > >> > > > > > > > > > > > > > -- > > Rapidly troubleshoot problems before they affect your business. Most IT > > organizations don't have a clear picture of how application performance > > affects their revenue. With AppDynamics, you get 100% visibility into > your > > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of > AppDynamics Pro! > > > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > > > > > > > > ___ > > Jmol-users mailing list > > Jmol-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rud
Re: [Jmol-users] Change maximum applet size
Sorry, I accidentally changed that to Jmol._allowedJmolSize with the "_" I will change it back. On Wed, Nov 27, 2013 at 10:49 AM, Rolf Huehne wrote: >Hi all, > > I tried to increase the maximum applet size with Jmol 13.3.8 but wasn't > succesful. > In 'JSmol.full.js' there is included the following comment on this: > /* By setting the Jmol.allowedJmolSize[] variable in the webpage > before calling Jmol.getApplet(), limits for applet size can be > overriden. > 2048 standard for GeoWall > (http://geowall.geo.lsa.umich.edu/home.html) > */ > > So I tried the following before calling 'Jmol.getApplet' but it didn't > work (still default maximum of 2048): >Jmol.allowedJmolSize = [25, 6000, 600]; > > In the Jmol wiki there is mentioned a slightly different way within the > part "Using a 1 pixel applet to preload" of the page > "http://wiki.jmol.org/index.php/Loading_Notice": >_jmol.allowedJmolSize = [25, 6000, 600]; > > But still no change. > > Any hint on what I am doing wrong? > > Regards, > Rolf > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 230296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Change maximum applet size
Hi all, I tried to increase the maximum applet size with Jmol 13.3.8 but wasn't succesful. In 'JSmol.full.js' there is included the following comment on this: /* By setting the Jmol.allowedJmolSize[] variable in the webpage before calling Jmol.getApplet(), limits for applet size can be overriden. 2048 standard for GeoWall (http://geowall.geo.lsa.umich.edu/home.html) */ So I tried the following before calling 'Jmol.getApplet' but it didn't work (still default maximum of 2048): Jmol.allowedJmolSize = [25, 6000, 600]; In the Jmol wiki there is mentioned a slightly different way within the part "Using a 1 pixel applet to preload" of the page "http://wiki.jmol.org/index.php/Loading_Notice": _jmol.allowedJmolSize = [25, 6000, 600]; But still no change. Any hint on what I am doing wrong? Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
On 11/27/2013 04:19 PM, Robert Hanson wrote: > I can fix that. Just got the file name wrong. Probably you are indicating > "j2s/" instead of "j2s" for Info.j2sPath, but I'll check, and it shouldn't > have to have that problem. > There is no '/' at the end. I provide a server absolute path (necessary because the page is build from a CGI script somewhere else): j2sPath: "/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s" Regards, Rolf > On Wed, Nov 27, 2013 at 7:47 AM, Rolf Huehne wrote: > >> Am 25.11.2013 20:05, schrieb Robert Hanson: >>> I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the >>> end of the week. Please send all bug fix requests as soon as possible >>> directly to this list. >>> >> Switching the language doesn't work for me with the applet version >> 13.3.8 with Firefox and Chrome on Win7 and Linux. In the application it >> works as expected. I have tested also version 13.3.9_2013.11.25c (from >> ZIP file 13.3.9_2013.11.26b.zip) on Linux and the results are the same >> plus other problems (see below). >> >> With Java there is no Jmol error message. Since I am using the IcedTea >> Java plugin I don't have a Java console to look for error messages there. >> With JSmol there is the following Javascript error message: >> -- >> Timestamp: 11/27/2013 01:57:36 PM >> Error: not well-formed >> Source File: >> >> http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po >> Line: 1, Column: 2 >> Source Code: >> # German translation of the Jmol applet >> --- >> >> and additionally this JSmol error message: >> -- >> script ERROR: TypeError: a is null >> -- >> >> With the version from 13.3.9_2013.11.26b.zip there is another problem >> within the 'Jena3D Viewer'. After starting the viewer the following >> error message is shown: >> -- >> script ERROR: InternalError: too much recursion >> -- >> >> This is triggerd by the initial Jmolscript and I could identify the >> specific command: >> set perspectivemodel 11 >> >> Besides I cannot open the popup menu in Firefox 25 and Chrome 30 on >> Linux. Neither right-click works nor left-click on the frank. >> >> Regards, >> Rolf >> >> -- >> >> Rolf Huehne >> Postdoc >> >> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) >> Beutenbergstrasse 11 >> 07745 Jena, Germany >> >> Phone: +49 3641 65 6205 >> Fax: +49 3641 65 6210 >> E-Mail: rhue...@fli-leibniz.de >> Website: http://www.fli-leibniz.de >> >> Scientific Director: Prof. Dr. K. Lenhard Rudolph >> Head of Administration: Dr. Daniele Barthel >> Chairman of Board of Trustees: Dennys Klein >> >> VAT No: DE 153 925 464 >> Register of Associations: No. 296, Amtsgericht Jena >> Tax Number: 162/141/08228 >> >> >> >> -- >> Rapidly troubleshoot problems before they affect your business. Most IT >> organizations don't have a clear picture of how application performance >> affects their revenue. With AppDynamics, you get 100% visibility into your >> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics >> Pro! >> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > > > > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how applic
Re: [Jmol-users] Jmol-JSO - custom pre-/post-processing script
yes, that's probably it. So you are OK. It's an issue with all MSIE
versions.
On Wed, Nov 27, 2013 at 8:52 AM, Rolf Huehne wrote:
> On 11/27/2013 03:59 AM, Robert Hanson wrote:
> > Rolf, I just found a bug in the GUI for JSmol that made it so that MSIE
> > executed commands in the search box twice -- I think it may be the same
> > with JenaLib:
> >
> > > onKeypress='if (event.keyCode == 13) {idbSubmitScript()}'>
> >
> > > onClick='idbSubmitScript()' value="run">
> >
> >
> >
> > At least for me, a combination just like that on jsmol.htm fired both
> > onKeyPress and onClick -- same command twice -- in MSIE specifically. So
> > all my hand-entered commands were being executed twice!
> >
> > At least for me, I had to change that onKeyPress to:
> >
> > onKeypress='if (event.keyCode == 13) {idbSubmitScript(); return false}
> >
> >
> > Nasty!
> >
> Bob, thank you for the hint.
> Which version of MSIE were you using on which windows version?
>
> I couldn't reproduce it in the 'Jena3D Viewer' with MSIE 10 and 11 on
> Win7 and MSIE 8 on WinXP.
> One difference I noticed between 'jsmol.htm' and the 'Jena3D Viewer' is
> that 'jsmol.htm' doesn't contain a '' element while the ''
> tag in the 'Jena3D Viewer' belongs to a '' element with
> "action='javascript:'".
>
> Regards,
> Rolf
>
> --
>
> Rolf Huehne
> Postdoc
>
> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
> Beutenbergstrasse 11
> 07745 Jena, Germany
>
> Phone: +49 3641 65 6205
> Fax: +49 3641 65 6210
> E-Mail: rhue...@fli-leibniz.de
> Website: http://www.fli-leibniz.de
>
>Scientific Director: Prof. Dr. K. Lenhard Rudolph
> Head of Administration: Dr. Daniele Barthel
> Chairman of Board of Trustees: Dennys Klein
>
> VAT No: DE 153 925 464
> Register of Associations: No. 230296, Amtsgericht Jena
> Tax Number: 162/141/08228
>
>
>
> --
> Rapidly troubleshoot problems before they affect your business. Most IT
> organizations don't have a clear picture of how application performance
> affects their revenue. With AppDynamics, you get 100% visibility into your
> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics
> Pro!
> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
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Re: [Jmol-users] Jmol 14.0.0 - Translation error
I can fix that. Just got the file name wrong. Probably you are indicating "j2s/" instead of "j2s" for Info.j2sPath, but I'll check, and it shouldn't have to have that problem. On Wed, Nov 27, 2013 at 7:47 AM, Rolf Huehne wrote: > Am 25.11.2013 20:05, schrieb Robert Hanson: > > I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the > > end of the week. Please send all bug fix requests as soon as possible > > directly to this list. > > > Switching the language doesn't work for me with the applet version > 13.3.8 with Firefox and Chrome on Win7 and Linux. In the application it > works as expected. I have tested also version 13.3.9_2013.11.25c (from > ZIP file 13.3.9_2013.11.26b.zip) on Linux and the results are the same > plus other problems (see below). > > With Java there is no Jmol error message. Since I am using the IcedTea > Java plugin I don't have a Java console to look for error messages there. > With JSmol there is the following Javascript error message: > -- > Timestamp: 11/27/2013 01:57:36 PM > Error: not well-formed > Source File: > > http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po > Line: 1, Column: 2 > Source Code: > # German translation of the Jmol applet > --- > > and additionally this JSmol error message: > -- > script ERROR: TypeError: a is null > -- > > With the version from 13.3.9_2013.11.26b.zip there is another problem > within the 'Jena3D Viewer'. After starting the viewer the following > error message is shown: > -- > script ERROR: InternalError: too much recursion > -- > > This is triggerd by the initial Jmolscript and I could identify the > specific command: >set perspectivemodel 11 > > Besides I cannot open the popup menu in Firefox 25 and Chrome 30 on > Linux. Neither right-click works nor left-click on the frank. > > Regards, > Rolf > > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: rhue...@fli-leibniz.de > Website: http://www.fli-leibniz.de > >Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics > Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Please test (2)
Good sleuthing. I appreciate that.. Clazz.superConstructor is just the
JavaScript equivalent of the Java:
class XXX {
public XXX() {
super()
}
}
which is very common. I think the real problem is with inner functions. I'm
refactoring the code now to get all public inner classes out of there.
ContourVertex
J.jvxl.readers.Dsn6BinaryReader
JSV.source.JSVXmlReader.DataBuffer
JZ.Inflate.Return
On Tue, Nov 26, 2013 at 10:57 PM, Jaime Prilusky <
jaime.prilu...@weizmann.ac.il> wrote:
> On Nov 27, 2013, at 12:30 AM, Robert Hanson wrote:
> > Yes, it's related to the fact that BondSet is an "inner class" of Bond.
> Something is as happening out of order. Utlimately, Bond.BondSet is created
> just fine. Very curious!
>
> Found in your code a few other calls to Clazz.superConstructor( that would
> generate a non-existing file path, like it happens with
> J.modelset.Bond.BondSet
>
> Are these working Ok? If this is the case, then why?
>
> J.jvxl.calc.MarchingSquares.ContourVertex
> J.jvxl.readers.Dsn6BinaryReader
> JSV.source.JSVXmlReader.DataBuffer
> JZ.Inflate.Return
>
> Jaim
>
> --
> Rapidly troubleshoot problems before they affect your business. Most IT
> organizations don't have a clear picture of how application performance
> affects their revenue. With AppDynamics, you get 100% visibility into your
> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics
> Pro!
> http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
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Re: [Jmol-users] Jmol-JSO - custom pre-/post-processing script
On 11/26/2013 10:49 PM, Rolf Huehne wrote: > Am 26.11.2013 22:15, schrieb Robert Hanson: >> I misunderstood. Somehow thought we were talking about the monitor >> message still. All my tests with >> >> set echo top left;echo xxx;refresh;more here..;echo; >> >> >> work fine. Can you give me some example that does not? >> > There might be some platfom-specific differences. With Firefox 25.0 on > Win7 on my laptop at home the wait message seems to be always wisible. > With Firefox 25.0 on Linux at the office it wasn't. I will try it again > tomorrow. Sorry for having bothered you, but it seems like some weird Firefox problem caused this. After I have reopened Firefox on Linux the wait message is now visible for all commands like on Win7. (But at least it helped finding the nasty MSIE command multiplier problem.) > Interestingly and somehow in contrast to the above, the JSmol speed > increased on my laptop by a factor of about 10 (regarding the number of > atoms, roughly comparing the rotation speed with about 5000 and 5 > atoms) after I updated a few days ago from Firefox version 22 to 25. The > Firefox update was the only change. But with Firefox version 25 on Linux > the speed is about the same as with Firefox 22 on Win7. > After the browser restart the JSmol speed with Firefox 25.0 on Linux is unexpectedly now very similar to that with Firefox 25.0 on Win7 on my laptop. But on another laptop with a supposedly even more powerful CPU the speed with Firefox 25.0 on Win7 is similarly low as with Firefox 22 on my laptop. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol-JSO - custom pre-/post-processing script
On 11/27/2013 03:59 AM, Robert Hanson wrote:
> Rolf, I just found a bug in the GUI for JSmol that made it so that MSIE
> executed commands in the search box twice -- I think it may be the same
> with JenaLib:
>
> onKeypress='if (event.keyCode == 13) {idbSubmitScript()}'>
>
> onClick='idbSubmitScript()' value="run">
>
>
>
> At least for me, a combination just like that on jsmol.htm fired both
> onKeyPress and onClick -- same command twice -- in MSIE specifically. So
> all my hand-entered commands were being executed twice!
>
> At least for me, I had to change that onKeyPress to:
>
> onKeypress='if (event.keyCode == 13) {idbSubmitScript(); return false}
>
>
> Nasty!
>
Bob, thank you for the hint.
Which version of MSIE were you using on which windows version?
I couldn't reproduce it in the 'Jena3D Viewer' with MSIE 10 and 11 on
Win7 and MSIE 8 on WinXP.
One difference I noticed between 'jsmol.htm' and the 'Jena3D Viewer' is
that 'jsmol.htm' doesn't contain a '' element while the ''
tag in the 'Jena3D Viewer' belongs to a '' element with
"action='javascript:'".
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
Scientific Director: Prof. Dr. K. Lenhard Rudolph
Head of Administration: Dr. Daniele Barthel
Chairman of Board of Trustees: Dennys Klein
VAT No: DE 153 925 464
Register of Associations: No. 230296, Amtsgericht Jena
Tax Number: 162/141/08228
--
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
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Re: [Jmol-users] Firefox/Mac loads Signed local Jmol but not Unsigned
Final note on the jsme and jsv links: Safari JME test neither applet loads JME Test2 JME loads, jmol does not JSV Spectrum loads, jmol does not JSV signed jmol does not load jv_mol nothing loads jv_mol signed works Firefox jsmetestworks jsmetest2 works jsv spectrum loads, jmol does not jsv signed spectrum loads, jmol does not testjsv_mol works testjsv_mol signed works On Nov 27, 2013, at 1:05 AM, Robert Hanson wrote: > OK. Tomorrow is Mac-testing day for me. Tell me your woes > > Please do try the latest, at > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip > > and > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > > By the way, those _USE attributes are standard now for any JSmol page. Also: > > _JAR=http://. (some other java location) > _J2S=http://. (some other j2s location) > > These should really help with remote debugging of different sites. > > If you haven't tried > > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest2.htm > > http://chemapps.stolaf.edu/jmol/jsmol/jsv.h`tm > http://chemapps.stolaf.edu/jmol/jsmol/jsv.htm?USE=SIGNED > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm?_USE=SIGNED > > be sure to try those. The last four demonstrate Robert Lancashire's and my > work this past couple of months getting JSpecView up and running in > JavaScript and in association with Jmol. > > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol 14.0.0 - Translation error
Am 25.11.2013 20:05, schrieb Robert Hanson: > I would like to retire Jmol 13.3 and 13.2 and release Jmol 14.0 by the > end of the week. Please send all bug fix requests as soon as possible > directly to this list. > Switching the language doesn't work for me with the applet version 13.3.8 with Firefox and Chrome on Win7 and Linux. In the application it works as expected. I have tested also version 13.3.9_2013.11.25c (from ZIP file 13.3.9_2013.11.26b.zip) on Linux and the results are the same plus other problems (see below). With Java there is no Jmol error message. Since I am using the IcedTea Java plugin I don't have a Java console to look for error messages there. With JSmol there is the following Javascript error message: -- Timestamp: 11/27/2013 01:57:36 PM Error: not well-formed Source File: http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-13.3.8/jsmol/j2s//trans/de.po Line: 1, Column: 2 Source Code: # German translation of the Jmol applet --- and additionally this JSmol error message: -- script ERROR: TypeError: a is null -- With the version from 13.3.9_2013.11.26b.zip there is another problem within the 'Jena3D Viewer'. After starting the viewer the following error message is shown: -- script ERROR: InternalError: too much recursion -- This is triggerd by the initial Jmolscript and I could identify the specific command: set perspectivemodel 11 Besides I cannot open the popup menu in Firefox 25 and Chrome 30 on Linux. Neither right-click works nor left-click on the frank. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Firefox/Mac loads Signed local Jmol but not Unsigned
Addendum: The local test was run using the new version posted last night. I have found that locally 25c seems to behave best and that seems to be what is also on Bob’s site. On Nov 27, 2013, at 1:05 AM, Robert Hanson wrote: > OK. Tomorrow is Mac-testing day for me. Tell me your woes > > Please do try the latest, at > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip > > and > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > > By the way, those _USE attributes are standard now for any JSmol page. Also: > > _JAR=http://. (some other java location) > _J2S=http://. (some other j2s location) > > These should really help with remote debugging of different sites. > > If you haven't tried > > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest2.htm > > http://chemapps.stolaf.edu/jmol/jsmol/jsv.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsv.htm?USE=SIGNED > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm?_USE=SIGNED > > be sure to try those. The last four demonstrate Robert Lancashire's and my > work this past couple of months getting JSpecView up and running in > JavaScript and in association with Jmol. > > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Firefox/Mac loads Signed local Jmol but not Unsigned
Now running locally. Safari File test.htm The applet HTML5 applet loads, but after some random number of structure selections it freezes up The JAVA and signed applets fail to load File test2.htm The HTML applet does not load initially, so nothing works. Selecting either JAVA or SIGNED to no avail Firefox File test.htm HTML5 loads and works with the exception of the Caffeine MMFF which loads but then freezes the applet Neither JAVA or SIDNED load the applet, though the FRANK is loaded. File test2 HTML5 loads fine again a freeze on the caffeine MMFF link Signed loads fine and runs fine except that the molecule name, while being transferred early seems to quite transferring after loading (correctly) the caffeine MMFF link. Thereafter caffeine remains the name of the structure. Unsigned throws a AccessControlException Just a comment about iOS 7. I have a page that does not involve any applets. It is at the link below. It behaves fine in Safari on Mavericks and in all desktop browsers that I know. It has been used by students for years. But in iOS7, the first two rows in the table suggest that all answers are wrong. I have tested this on an iPad, iPad mini, and my phone. In addition, I had my granddaughter test it on a 1st generation iPad running iOS 5…. I was surprised to see that the error was there too — so iOS seems to have some long standing javascript issues. http://sites.saintmarys.edu/~pbays/Programs/Stereochemistry/Cyclohexanes.htm Phil On Nov 27, 2013, at 1:05 AM, Robert Hanson wrote: > OK. Tomorrow is Mac-testing day for me. Tell me your woes > > Please do try the latest, at > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip > > and > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > > By the way, those _USE attributes are standard now for any JSmol page. Also: > > _JAR=http://. (some other java location) > _J2S=http://. (some other j2s location) > > These should really help with remote debugging of different sites. > > If you haven't tried > > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest2.htm > > http://chemapps.stolaf.edu/jmol/jsmol/jsv.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsv.htm?USE=SIGNED > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm?_USE=SIGNED > > be sure to try those. The last four demonstrate Robert Lancashire's and my > work this past couple of months getting JSpecView up and running in > JavaScript and in association with Jmol. > > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Firefox/Mac loads Signed local Jmol but not Unsigned
Safari 7.0: JAVA works fine Signed works fine HTML5 The applet does not load at all. [Error] Failed to load resource: the server responded with a status of 404 (Not Found) (BondSet.js, line 0) [Error] Failed to load resource: the server responded with a status of 404 (Not Found) (BondSet.js, line 0) [Error] java.lang.NullPointerException (anonymous function) (core.z.js, line 398) (anonymous function) (core.z.js, line 2259) (anonymous function) (core.z.js, line 2251) (anonymous function) (core.z.js, line 2228) instantialize (JSmol.min.js, line 344) (anonymous function) (core.z.js, line 2227) innerTypeInstance (JSmol.min.js, line 359) (anonymous function) (core.z.js, line 2195) (anonymous function) (core.z.js, line 936) (anonymous function) (core.z.js, line 925) (anonymous function) (core.z.js, line 916) instantialize (JSmol.min.js, line 344) (anonymous function) (core.z.js, line 912) (anonymous function) (core.z.js, line 505) (anonymous function) (core.z.js, line 505) (anonymous function) (core.z.js, line 503) instantialize (JSmol.min.js, line 344) (anonymous function) (core.z.js, line 502) __startAppletJS (JSmol.min.js, line 258) __nextExecution (JSmol.min.js, line 263) Firefox 25.01: JAVA works fine Signed works fine except that the name of the compound is not relayed to the text box below the applet HTML5 works fine except for Caffeine with MMFF. The structure loads but the surface does not and freezes at that point. The FRANK does not open for me. It appears that you are using version ….. 25c on all of these iOS7 Safari (Only thing I can test this on is my iPhone) HTML5 works but periodically freezes and/or crashes However, unlike Mavericks, the applet does load. I will send another response for local of the new download. I can not seem to get the Mavericks web server set up properly, so I have no means to run the new version on a server from home. Takes to long to move the files to the campus server from home. Phil On Nov 27, 2013, at 1:05 AM, Robert Hanson wrote: > OK. Tomorrow is Mac-testing day for me. Tell me your woes > > Please do try the latest, at > > http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.26b.zip > > and > > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=HTML5 > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=JAVA > http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED > > By the way, those _USE attributes are standard now for any JSmol page. Also: > > _JAR=http://. (some other java location) > _J2S=http://. (some other j2s location) > > These should really help with remote debugging of different sites. > > If you haven't tried > > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsmetest2.htm > > http://chemapps.stolaf.edu/jmol/jsmol/jsv.htm > http://chemapps.stolaf.edu/jmol/jsmol/jsv.htm?USE=SIGNED > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm > http://chemapps.stolaf.edu/jmol/jsmol/testjsv_mol.htm?_USE=SIGNED > > be sure to try those. The last four demonstrate Robert Lancashire's and my > work this past couple of months getting JSpecView up and running in > JavaScript and in association with Jmol. > > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk
