[Jmol-users] bugs?

2015-12-30 Thread Spinney, Richard

I have a number of pages with 2 jsmol "applets" synced, some work fine but 
others fail with the following error:

TypeError: this.viewer is null try/catch path:
0 function (b,d)
args[0]=TypeError: this.viewer is null
args[1]=function (){a.instantialize(this,arguments)}
1 JU.GenericApplet.sendScript(a,b,d,c)
args[0]=true
args[1]=null
args[2]=true
args[3]=false
2 JU.GenericApplet.notifyCallback(a,b)
args[0]=SYNC
args[1]=jmolApplet1,true,*,0
3 JV.StatusManager.syncSend(a,
b,c)
args[0]=jmolApplet1,true,*,0
args[1]=*
args[2]=0
4 JV.StateCreator.syncScript(script, applet, port)
 args[0]=true
args[1]=*
args[2]=0
5 JV.Viewer.syncScript(a,b,c)
args[0]=true
args[1]=*
args[2]=0
6 JS.ScriptEval.cmdSync()
7 JS.ScriptEval.processCommand(a)
args[0]=4156
8 JS.ScriptEval.commandLoop(a)
args[0]=true
9 JS.ScriptEval.dispatchCommands(a,b,c)
args[0]=false
args[1]=false
args[2]=false

I am not sure what the problem is, any help would be appreciated. Clicking on 
the error message allows the applets to load but they are not synced.
(These pages worked before but have been broken since at least 14.3.15, I am 
currently running 14.4.1).

I also have a number of pages that used "ESP mapped total electron density 
surfaces. They are JVXL files (version 2.2) generated using the Jmol 
application. The isosurfaces appear but the color mapping is missing, they 
appear in a single chromic orange color.


I also noticed that the "lcaocartoon scale 1.0 CAP unitcell "cpk"" command to 
created "packed" unit cells seems to have a bug. Atoms that are half in the 
unit cell have a flat surface on the cell wall, but atoms at the corner of the 
unit cell are missing 2 or 3 of the flat surfaces along the unit cell walls.

Thanks, Rick

Dr. Richard Spinney
Department of Chemistry & Biochemistry
The Ohio State University
120A Celeste Laboratory
120 West 18th Ave
Columbus, Ohio 43210

Email: 
rspin...@chemistry.ohio-state.edu
Phone:(614) 247 - 6847
Fax:  (614) 292 - 1685

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[Jmol-users] Jmol on Maven Central

2015-12-30 Thread Mark Williamson
Dear Jmol users,

I see that there is a version of Jmol on Maven central:

http://search.maven.org/#search|ga|1|jmol

However the latest version here is around 13. I was wondering if the 
person who deployed this is on this list and if it would be possible for 
that person to deploy a more recent (say 14) version of Jmol?

Thanks,

Mark

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