Re: [Jmol-users] Symbols
On 04/04/2016 09:05 PM, Philip Bays wrote:
> Some days/weeks ago someone posted the symbols used for the various databases
> (i.e. $ for NCl) I cannot find that post which I know I saved:-( Can
> someone refresh it for me.
>
Phil, have you looked at the scripting documentation for the 'load'
command ("http://chemapps.stolaf.edu/jmol/docs/?ver=14.4#load";)?
The 'File types' section seems to be pretty comprehensive, also with the
special syntax options like for example '$',':','='.
Regards,
Rolf
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Re: [Jmol-users] Symbols
Dear Phil, I don't remember seeing that post A search for "database" on the Jmol Wiki brouth this http://wiki.jmol.org/index.php/Database_Connection although not fully up to date, I see -- ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Symbols
Some days/weeks ago someone posted the symbols used for the various databases (i.e. $ for NCl) I cannot find that post which I know I saved:-( Can someone refresh it for me. Phil Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] How to show a cross-section of an isosurface?
Just slab it from both sides with a thin shell in between.
You could also plot the "heat map" of the isosurface onto the plane. But
perhaps you don't need that.
load C6H6.smol
isosurface molecular map mep
isosurface slab none slab plane {0 0 1 -0.05} slab plane {0 0 -1 -0.05}
[image: Inline image 1]
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Re: [Jmol-users] How to show a cross-section of an isosurface?
Dear Angel and jmol group: Thank you Angel for suggesting slab and cap, which are nice. However they don't give me what I'm looking for. For instance, if the isosurface is a sphere, then I would like the intersection of the sphere with a plane; in other words, a circle. In contrast, slab gives me a half-sphere, and cap gives me a half-sphere plus a plane covering it. I would like to ask the jmol group for further suggestions about how to plot the intersection of an isosurface with a plane. The intersection should be one or more curves plotted where the plane hits the isosurface. Thank you, Vincent On Thu, Mar 31, 2016 at 7:22 PM, Angel Herráez wrote: > Hi Vincent > > This is a wild guess, but maybe you should try the CAP or SLAB options of > the isosurface > > http://chemapps.stolaf.edu/jmol/docs/#isosurfaceconstruction/mappingparam > eters--generalshapesandvolumetriccubefiledata > > > > -- ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
