[Jmol-users] CHIME2Jmol
Folks,For those of you trying to convert from CHIME to Jmol, I offer the following modest resource: http://www.chem.umass.edu/people/cmartin/Jmol/Development/CHIME2Jmol.htmlIt presents a simple form that takes HTML code containing CHIME instructions and tries to convert them to equivalent Jmol instructions (assumes the use of Jmol.js routines in your final page). Paste your code into input, press "Convert" and then copy the result from output.This is by no means complete, but does a surprisingly good job for the basics of buttons, links and toggles. Definition of the applet window will still have to be done by hand.If anyone wants to augment it's capabilities, feel free (but I'd love to hear about it!) Craig MartinDept of ChemistryUniv of Massachusetts at Amherst[EMAIL PROTECTED]
[Jmol-users] chime2jmol
I'd like to convert some of my CHIME scripts (like those at http://exlnt.com/search_pdb) using the chime2jmol.pl script in Jmol v10. I can't seem to find any documentation on usage and required parameters. What are command line arguments v, a, s, c and b? --- This SF.net email is sponsored by: SF.net Giveback Program. Does SourceForge.net help you be more productive? Does it help you create better code? SHARE THE LOVE, and help us help YOU! Click Here: http://sourceforge.net/donate/ ___ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Chime2JMol
Hi, There is one more small issue concerning Chime to JMol migration: while Chime starts numbering atoms (and everything else) at zero (a programmers choice), JMol starts numbering with atom 1 ( a chemists, or any other 'normal' person's choice). So there is a decision to be made: stick to Atom-one, and increase all your numbers in current scripts by one (not a big deal), or adopt the Chime numbering. My vote would be for the former. Furthermore I support Pat Carroll's compliments for JMol, and his request for a measuring panel (dist, angle. dihedral) and adjustable atom radii. Rasmol scripts have a provision for both: set picking distance etc. (would require a mechanism to place the result somewhere) , and 'spacefill number'. Greetings, Hens Borkent --- This sf.net email is sponsored by:ThinkGeek Welcome to geek heaven. http://thinkgeek.com/sf ___ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
