Re: [Jmol-users] Transfer show info from JSO to Javascript?
http://chemapps.stolaf.edu/jmol/docs/?&search=quaternion%28%29#jmolmath
*The quaternion q = quaternion(script("show rotation")) (or, in Jmol 12.2,
just q = quaternion()) measures how much the model has been rotated from
its reference position (with x to the right, y to the top, and z toward the
user). It can be used to align any axis or plane with any other
"window-frame" axis. For example, here is a quaternion recipe for the
shortest rotation that takes atom "X" and puts it between the center of the
model and the user, that is, "in the forefront:"*
*q = quaternion(script("show rotation"))
toAtom = {C1}.xyz - {*}.xyz
toUser = (!q)%{0 0 1}
axis = cross(toAtom, toUser)
a = angle(toAtom, {0 0 0}, axis, toUser)
rotate MOLECULAR {0 0 0} @axis @a
*
On Fri, Feb 22, 2013 at 5:34 PM, Dan Kirshner wrote:
> Excellent, thanks.
>
> But where is it that I can learn that there such a thing as "quaternion()"?
>
> --Dan
>
>
> --
> *From:* Robert Hanson
> *To:* "jmol-users@lists.sourceforge.net"
>
> *Sent:* Friday, February 22, 2013 1:47 PM
> *Subject:* Re: [Jmol-users] Transfer show info from JSO to Javascript?
>
> sure, but
>
> quaternion()
>
> should do the same thing -- and we should think about the fact that with
> JSmol we don't need conversion from Java classes, since everything is
> JavaScript!
>
> Bob
>
>
>
> On Fri, Feb 22, 2013 at 1:51 PM, Paul Pillot <
> paul.pil...@ac-orleans-tours.fr> wrote:
>
> Jmol.evaluate(myJmol1,"script(show orientation)") will do !
> -Paul
>
> Le 22 févr. 2013 à 20:27, Dan Kirshner a écrit :
>
> Sorry, I'm just not getting how to do this.
>
> I'd like to get the quaternion info for the current model rotation and
> manipulate it in Javascript.
>
> I'm using the Jmol Javascript Object. I'm happily running scripts with
> something like
>
>var script = "";
>Jmol.script (myJmol1, script);
>
> The Jmol command
>
>show orientation rotation;
>
> gives me the numbers I want -- in both the Jmol Script Console and in the
> Java Console.
>
> How do I get these numbers into a Javascript variable?
>
> Something like
>
>var q = Jmol.getInfo (myJmol1, "show orientation rotation");
>
> is what I'm thinking, but I haven't found a variation that works!
>
> Thanks!
>
> --Dan
>
>
> --
> Everyone hates slow websites. So do we.
> Make your web apps faster with AppDynamics
> Download AppDynamics Lite for free today:
>
> http://p.sf.net/sfu/appdyn_d2d_feb___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Everyone hates slow websites. So do we.
> Make your web apps faster with AppDynamics
> Download AppDynamics Lite for free today:
> http://p.sf.net/sfu/appdyn_d2d_feb
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> --
> Everyone hates slow websites. So do we.
> Make your web apps faster with AppDynamics
> Download AppDynamics Lite for free today:
> http://p.sf.net/sfu/appdyn_d2d_feb
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Everyone hates slow websites. So do we.
> Make your web apps faster with AppDynamics
> Download AppDynamics Lite for free today:
> http://p.sf.net/sfu/appdyn_d2d_feb
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/h
Re: [Jmol-users] Transfer show info from JSO to Javascript?
http://chemapps.stolaf.edu/jmol/docs/ On 22 February 2013 23:34, Dan Kirshner wrote: > Excellent, thanks. > > But where is it that I can learn that there such a thing as "quaternion()"? > > --Dan > > > -- > *From:* Robert Hanson > *To:* "jmol-users@lists.sourceforge.net" > > *Sent:* Friday, February 22, 2013 1:47 PM > *Subject:* Re: [Jmol-users] Transfer show info from JSO to Javascript? > > sure, but > > quaternion() > > should do the same thing -- and we should think about the fact that with > JSmol we don't need conversion from Java classes, since everything is > JavaScript! > > Bob > > > > On Fri, Feb 22, 2013 at 1:51 PM, Paul Pillot < > paul.pil...@ac-orleans-tours.fr> wrote: > > Jmol.evaluate(myJmol1,"script(show orientation)") will do ! > -Paul > > Le 22 févr. 2013 à 20:27, Dan Kirshner a écrit : > > Sorry, I'm just not getting how to do this. > > I'd like to get the quaternion info for the current model rotation and > manipulate it in Javascript. > > I'm using the Jmol Javascript Object. I'm happily running scripts with > something like > >var script = ""; >Jmol.script (myJmol1, script); > > The Jmol command > >show orientation rotation; > > gives me the numbers I want -- in both the Jmol Script Console and in the > Java Console. > > How do I get these numbers into a Javascript variable? > > Something like > >var q = Jmol.getInfo (myJmol1, "show orientation rotation"); > > is what I'm thinking, but I haven't found a variation that works! > > Thanks! > > --Dan > > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > > http://p.sf.net/sfu/appdyn_d2d_feb___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Transfer show info from JSO to Javascript?
Excellent, thanks. But where is it that I can learn that there such a thing as "quaternion()"? --Dan > > From: Robert Hanson >To: "jmol-users@lists.sourceforge.net" >Sent: Friday, February 22, 2013 1:47 PM >Subject: Re: [Jmol-users] Transfer show info from JSO to Javascript? > > >sure, but > >quaternion() > >should do the same thing -- and we should think about the fact that with JSmol >we don't need conversion from Java classes, since everything is JavaScript! > >Bob > > > > > >On Fri, Feb 22, 2013 at 1:51 PM, Paul Pillot >wrote: > >Jmol.evaluate(myJmol1,"script(show orientation)") will do ! >>-Paul >> >> >> >>Le 22 févr. 2013 à 20:27, Dan Kirshner a écrit : >> >>Sorry, I'm just not getting how to do this. >>> >>> >>>I'd like to get the quaternion info for the current model rotation and >>>manipulate it in Javascript. >>> >>> >>>I'm using the Jmol Javascript Object. I'm happily running scripts with >>>something like >>> >>> >>> var script = ""; >>> >>> Jmol.script (myJmol1, script); >>> >>> >>>The Jmol command >>> >>> >>> show orientation rotation; >>> >>> >>>gives me the numbers I want -- in both the Jmol Script Console and in the >>>Java Console. >>> >>> >>>How do I get these numbers into a Javascript variable? >>> >>> >>>Something like >>> >>> >>> var q = Jmol.getInfo (myJmol1, "show orientation rotation"); >>> >>> >>>is what I'm thinking, but I haven't found a variation that works! >>> >>> >>>Thanks! >>> >>> >>>--Dan >>> >>> >>> >>>-- >>>Everyone hates slow websites. So do we. >>>Make your web apps faster with AppDynamics >>>Download AppDynamics Lite for free today: >>>http://p.sf.net/sfu/appdyn_d2d_feb___ >>>Jmol-users mailing list >>>Jmol-users@lists.sourceforge.net >>>https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >> >>-- >>Everyone hates slow websites. So do we. >>Make your web apps faster with AppDynamics >>Download AppDynamics Lite for free today: >>http://p.sf.net/sfu/appdyn_d2d_feb >>___ >>Jmol-users mailing list >>Jmol-users@lists.sourceforge.net >>https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > >-- >Robert M. Hanson >Larson-Anderson Professor of Chemistry >Chair, Chemistry Department >St. Olaf College >Northfield, MN >http://www.stolaf.edu/people/hansonr > > >If nature does not answer first what we want, >it is better to take what answer we get. > >-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > >-- >Everyone hates slow websites. So do we. >Make your web apps faster with AppDynamics >Download AppDynamics Lite for free today: >http://p.sf.net/sfu/appdyn_d2d_feb >___ >Jmol-users mailing list >Jmol-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/jmol-users > > >-- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Transfer show info from JSO to Javascript?
sure, but quaternion() should do the same thing -- and we should think about the fact that with JSmol we don't need conversion from Java classes, since everything is JavaScript! Bob On Fri, Feb 22, 2013 at 1:51 PM, Paul Pillot < paul.pil...@ac-orleans-tours.fr> wrote: > Jmol.evaluate(myJmol1,"script(show orientation)") will do ! > -Paul > > Le 22 févr. 2013 à 20:27, Dan Kirshner a écrit : > > Sorry, I'm just not getting how to do this. > > I'd like to get the quaternion info for the current model rotation and > manipulate it in Javascript. > > I'm using the Jmol Javascript Object. I'm happily running scripts with > something like > >var script = ""; >Jmol.script (myJmol1, script); > > The Jmol command > >show orientation rotation; > > gives me the numbers I want -- in both the Jmol Script Console and in the > Java Console. > > How do I get these numbers into a Javascript variable? > > Something like > >var q = Jmol.getInfo (myJmol1, "show orientation rotation"); > > is what I'm thinking, but I haven't found a variation that works! > > Thanks! > > --Dan > > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > > http://p.sf.net/sfu/appdyn_d2d_feb___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Transfer show info from JSO to Javascript?
var q = Jmol.evaluate(myJmol, "quaternion()") On Fri, Feb 22, 2013 at 1:27 PM, Dan Kirshner wrote: > Sorry, I'm just not getting how to do this. > > I'd like to get the quaternion info for the current model rotation and > manipulate it in Javascript. > > I'm using the Jmol Javascript Object. I'm happily running scripts with > something like > >var script = ""; >Jmol.script (myJmol1, script); > > The Jmol command > >show orientation rotation; > > gives me the numbers I want -- in both the Jmol Script Console and in the > Java Console. > > How do I get these numbers into a Javascript variable? > > Something like > >var q = Jmol.getInfo (myJmol1, "show orientation rotation"); > > is what I'm thinking, but I haven't found a variation that works! > > Thanks! > > --Dan > > > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Transfer show info from JSO to Javascript?
Jmol.evaluate(myJmol1,"script(show orientation)") will do ! -Paul Le 22 févr. 2013 à 20:27, Dan Kirshner a écrit : > Sorry, I'm just not getting how to do this. > > I'd like to get the quaternion info for the current model rotation and > manipulate it in Javascript. > > I'm using the Jmol Javascript Object. I'm happily running scripts with > something like > >var script = ""; >Jmol.script (myJmol1, script); > > The Jmol command > >show orientation rotation; > > gives me the numbers I want -- in both the Jmol Script Console and in the > Java Console. > > How do I get these numbers into a Javascript variable? > > Something like > >var q = Jmol.getInfo (myJmol1, "show orientation rotation"); > > is what I'm thinking, but I haven't found a variation that works! > > Thanks! > > --Dan > > -- > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
