[julia-users] NLreg (again)
There seems to be a relatively new version of NLreg available (as of Sept).
I'm still having problems.
following the example in the doc:
using DataFrames, NLreg
works fine,
const sd1 = readtable(Pkg.dir("NLreg","data","sd1.csv.gz"));
works fine, sd1 table is OK
nl = fit(BolusSD1(CONC ~ TIME, sd1))
returns:
ERROR: type Array has no field data
in gpinc at C:\users\Mark\.julia\v0.3\NLreg\src\plreg.jl:143
I'm using Windows 7, 64 bit, Julia 0.3.3.
Thanks for any help
Mark
[julia-users] NLreg on windows
Anyone have any success running NLreg on Windows 7, 64 bit? When I try using NLreg, I'm getting the error. Error: FP not defined in include at boot.j1:245 in include_from_node1 at loading.j1:128 while loading c:\users\Mark\.julia\v0.3\NLreg\src\Nlreg.j1, in expression starting on line 1. I've tried version 1.2, 2.0, 3.0 (and the development, which looks like it it identical to 3.0). Any suggestions? thanks Mark
Re: [julia-users] Re: error in using NLreg
Dr. Bates, Thanks very much for you input. I tried running it with version 0.1.2 and version 0.3.0, without success either. Looks like the most practical thing for me to do is just to wait a little while until things mature a little bit more. thanks again Mark On Wed, Feb 19, 2014 at 11:57 AM, Douglas Bates wrote: > I'm not surprised that current versions of the NLreg package fail on 0.2.0 > - I haven't been careful to maintain backward compatibility. > > My guess is that it is > > FloatingPoint > > that is not defined in 0.2.0. It was actually because of a suggestion you > made, Mark, that I templated these types to allow for later extensions to > Float128 or BigFloat. There are now some general matrix factorizations > that can apply to types like BigFloat. > > It may be better in the short term to remove the templates and just keep > in mind that they could be added later. > > Fixing that problem would probably not make NLreg 0.2.0-compatible. There > have been so many changes in Stats, StatsBase, DataArrays, DataFrames and > the numerical linear algebra that it would be easier to install the > development version of Julia than to try to back-port a package like NLreg > that is under development. > > > On Tuesday, February 18, 2014 8:02:16 AM UTC-6, Mark Sale wrote: > >> Ivar, >> Thanks for your reply. >> After I had this error, I did a fresh install of version 0.2, and fresh >> install of NLreg, using Pk.add. Also IJulia and DataFrames, and Stats. >> I get the same message from command line Julie and IJulia. >> I had JuliaStudio installed, but removed it before the fresh install of >> everything. I cleaned out c:\users\Mark\.Julia and deleted >> c:\users\Mark\.julia_history prior to fresh install. >> Got the same error >> >> WARNING: backtraces on your platform are often misleading or partially >> incorrect >> >> FP not defined >> at C:\Users\Mark\.julia\NLreg\src\NLreg.jl:1 >> at In[2]:1 >> in include at boot.jl:238 >> in include_from_node1 at loading.jl:114 >> in reload_path at loading.jl:140 >> >>Below is the output from versioninfo(true) in IJulia. >> >> >> Julia Version 0.2.0 >> Commit 05c6461 (2013-11-16 23:44 UTC) >> Platform Info: >> System: Windows (x86_64-w64-mingw32) >> WORD_SIZE: 64 >>Microsoft Windows [Version 6.1.7601] >> uname: MINGW32_NT-6.1 1.0.12(0.46/3/2) 2011-07-20 17:52 i686 unknown >> Memory: 9.991302490234375 GB (6382.515625 MB free) >> Uptime: 309228.9111207 sec >> Load Avg: 0.0 0.0 0.0 >> Intel(R) Core(TM) i7 CPU 970 @ 3.20GHz: >> speed user nicesys idleirq >> ticks >> #1-12 3192 MHz 77313232 0 26718549 36067095261090255 >> ticks BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY) >> LAPACK: libopenblas >> LIBM: libopenlibm >> Environment: >> JULIA = c:\julia2\bin\julia-readline.exe >> JULIA_EDITOR = start >> JULIA_EXE = julia-readline.exe >> JULIA_HOME = c:\julia2\bin\ >> SYS_PATH = C:\Anaconda\lib\site-packages\numpy\core;C:\Program >> Files\Common Files\Microsoft Shared\Microsoft Online Services;C:\Program >> Files (x86)\Common Files\Microsoft Shared\Microsoft Online >> Services;C:\Program Files\Common Files\Microsoft Shared\Windows >> Live;C:\Program Files (x86)\Common Files\Microsoft Shared\Windows >> Live;C:\Program Files (x86)\Microsoft Visual Studio 8\Common7\IDE;C:\Program >> Files (x86)\Microsoft Visual Studio 8\Common7\Tools;C:\Program Files >> (x86)\Microsoft Visual Studio 8\Common7\Tools\bin;C:\PROGRAM FILES >> (X86)\Microsoft Visual Studio >> 10.0\VC\PlatformSDK\bin;C:\Perl64\site\bin;C:\Perl64\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program >> Files (x86)\ATI Technologies\ATI.ACE\Core-Static;c:\Program Files >> (x86)\Common Files\Roxio Shared\DLLShared\;c:\Program Files (x86)\Common >> Files\Roxio Shared\DLLShared\;c:\Program Files (x86)\Common Files\Roxio >> Shared\12.0\DLLShared\;C:\Program Files >> (x86)\Intel\Compiler\Fortran\10.1.011\EM64T\Lib;c:\Program Files >> (x86)\intel\compiler\fortran\10.1.011\em64t\bin;c:\program files >> (x86)\Microsoft Visual Studio 10.0\vc\bin;c:\program files (x86)\Microsoft >> Visual Studio 10.0\common7\ide;c:\program files (x86)\Microsoft >> sdks\windows\v7.0a\lib\x64;C:\Program >> Files\mpich2\bin;c:\nm72\util;c:\nm72\mpi;c:\Program >> Files\mpich2\include;c:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web >> Pages\v1.0\;C:\
Re: [julia-users] Re: error in using NLreg
(x86)\Microsoft Visual Studio 10.0\vc\bin;c:\program files (x86)\Microsoft Visual Studio 10.0\common7\ide;c:\program files (x86)\Microsoft sdks\windows\v7.0a\lib\x64;C:\Program Files\mpich2\bin;c:\nm72\util;c:\nm72\mpi;c:\Program Files\mpich2\include;c:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web Pages\v1.0\;C:\Program Files (x86)\QuickTime\QTSystem\;C:\Program Files (x86)\Windows Live\Shared;C:\Program Files\Microsoft SQL Server\110\Tools\Binn\;c:\Program Files (x86)\Microsoft SQL Server\110\Tools\Binn\;c:\Program Files\Microsoft SQL Server\110\DTS\Binn\;c:\Program Files (x86)\Microsoft SQL Server\110\Tools\Binn\ManagementStudio\;c:\Program Files (x86)\Microsoft SQL Server\110\DTS\Binn\;C:\Program Files\Microsoft\Web Platform Installer\;C:\Program Files (x86)\Windows Kits\8.0\Windows Performance Toolkit\;C:\Program Files (x86)\MathWorks\MATLAB Component Runtime\v73\runtime\win32;C:\Program Files\MATLAB\R2012b\bin;c:\Progra~1\Window~2\Accessories\;C:\Program Files (x86)\Git\cmd;C:\Anaconda;C:\Anaconda\Scripts;C:\Program Files\Git\bin;C:\Program Files (x86)\Git\bin;C:\MinGW\bin;C:\MinGW\msys\1.0\bin;C:\Python27;C:\Python26;C:\Python25 HOMEPATH = \Users\Mark CLASSPATH = .;C:\Program Files (x86)\Java\jre6\lib\ext\QTJava.zip PATHEXT = .COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC HOMEDRIVE = C: Package Directory: C:\Users\Mark\.julia Required packages: - IJulia0.1.4 - NLreg 0.0.0 edccac38 (dirty) - PyPlot1.2.2 - Stats 0.1.0 Additional packages: - BinDeps 0.2.12 - Blocks0.0.2 - Color 0.2.8 - DataFrames0.3.16 - Distributions 0.3.0 - GZip 0.2.10 - HTTPClient0.1.0 - JSON 0.3.3 - LibCURL 0.1.0 - LibExpat 0.0.3 - NLopt 0.0.3 - Nettle0.1.3 - NumericExtensions 0.3.6 - PyCall0.4.1 - REPLCompletions 0.0.0 - SortingAlgorithms 0.0.1 - StatsBase 0.3.6 - URIParser 0.0.1 - URLParse 0.0.0 - WinRPM0.0.12 - ZMQ 0.1.8 - Zlib 0.1.4 Thanks for any help Mark On Tue, Feb 18, 2014 at 3:41 AM, Ivar Nesje wrote: > This seems like an installation issue. Douglas Bates has defined a > typealias FP FloatingPoint to reduce the amount of typing, but to me it > seems like he has done it right. Can you provide more info about how you > installed Julia and NLreg.jl, and what versions you are using > "versioninfo(true)". > > > > > > kl. 03:04:57 UTC+1 tirsdag 18. februar 2014 skrev Mark Sale følgende: > >> sorry hit POST to soon, >> when I try >> using NLreg >> >> I get >> ERROR: FP not defined >> in include at boot.jl:238 >> in include_from_node_1 at loading.j1:114 >> in reload_path at loading.j1.140 >> WARNING: backtraces on your platform are often misleading or partially >> incorrect >> >> at c:\users\mark\.julia\NLreg\src\NLreg.j1.1 >> >> >> Any suggestions? >> thanks >> Mark >> >> >> On Monday, February 17, 2014 9:01:31 PM UTC-5, Mark Sale wrote: >>> >>> Hi, >>> New to Julia, I'm trying to use the NLreg package, in Windows 7, 64 >>> bit. I try >>> >>> using NLreg >>> >>> and I get the message >>> ERROR: FP not defined >>> >>
[julia-users] Re: error in using NLreg
sorry hit POST to soon, when I try using NLreg I get ERROR: FP not defined in include at boot.jl:238 in include_from_node_1 at loading.j1:114 in reload_path at loading.j1.140 WARNING: backtraces on your platform are often misleading or partially incorrect at c:\users\mark\.julia\NLreg\src\NLreg.j1.1 Any suggestions? thanks Mark On Monday, February 17, 2014 9:01:31 PM UTC-5, Mark Sale wrote: > > Hi, > New to Julia, I'm trying to use the NLreg package, in Windows 7, 64 bit. > I try > > using NLreg > > and I get the message > ERROR: FP not defined >
[julia-users] error in using NLreg
Hi, New to Julia, I'm trying to use the NLreg package, in Windows 7, 64 bit. I try using NLreg and I get the message ERROR: FP not defined
