Re: [Kwant] discontinuity between lead and scattering region

2020-05-18 Thread Abbout Adel
Dear Naveen,

You can do it the way explained below.
(probably a small change may be done if the vectors of the lattice are not
orthogonal)

I hope this helps,
Adel

import numpyfrom kwant.wraparound import wraparound,plot_2d_bandsfrom
matplotlib import pyplotget_ipython().magic('matplotlib inline')import
sysimport itertoolsimport collectionsimport cmathimport numpy as
npimport tinyarray as tafrom numpy import pi,sqrt,arccos,arrayimport
kwantfrom kwant.builder import herm_conj





def plot_bands_2d(syst, args=(), momenta=(31, 31, 31), kz=0): """Plot the
bands of a system with two wrapped-around symmetries.""" from
mpl_toolkits.mplot3d import Axes3D from matplotlib import pyplot if not
isinstance(syst, kwant.system.FiniteSystem): raise TypeError("Need a system
without symmetries.") fig = pyplot.figure() ax = fig.gca(projection='3d')
kxs = np.linspace(-np.pi, np.pi, momenta[0]) kys = np.linspace(-np.pi, np.pi
, momenta[1]) def get_energies(kz=kz): energies = [[np.sort(np.linalg.
eigvalsh(syst.hamiltonian_submatrix( args + (kx, ky, kz), sparse=False)).
real) for ky in kys] for kx in kxs] return energies energies = np.array(
get_energies(kz=kz)) Colors=['orange','g','b','r','y'] mesh_x, mesh_y = np.
meshgrid(kxs, kys) for i in range(energies.shape[-1]): ax.plot_wireframe(
mesh_x, mesh_y, energies[:, :, i], rstride=1, cstride=1,color=Colors[i]) ax.
plot_surface(mesh_x, mesh_y, energies[:, :, i], rstride=1, cstride=1,color=
Colors[i]) #pyplot.show() def make_sys(): def Onsite(site): return array([[1
,1],[1,-1]]) """Create a builder for a periodic infinite sheet of
graphene.""" lat =kwant.lattice.cubic(norbs=2) sym = kwant.
TranslationalSymmetry(lat.vec((1, 0,0)), lat.vec((0, 1,0)),lat.vec((0, 0,1
))) syst = kwant.Builder(sym) syst[lat.shape(lambda p: True, (0, 0, 0))] =
Onsite syst[lat.neighbors()] = array([[1,1j],[-1j,1]])

return syst



sys=make_sys()syst = wraparound(sys).finalized()

plot_bands_2d(syst,kz=-3)



#


On Sun, May 17, 2020 at 8:10 PM Naveen Yadav 
wrote:

> Dear sir,
> As you said I tried the wraparound module but I got errors while
> diagonalizing the system. I don't know how to use this module for 3D system.
> Please help. The code is attached below
>
> UserCodeError: Error occurred in user-supplied value function "f".
> See the upper part of the above backtrace for more information.
>
>
> sys=kwant.Builder(kwant.TranslationalSymmetry((0,0,-1)))
> lat=kwant.lattice.cubic(norbs=2)
> sys[(lat(x,y,0) for x in range(L) for y in range(W))]=onsite
> sys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] = hoppingx
> sys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] = hoppingy
> sys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] = hoppingz
>
> #lead=kwant.Builder(kwant.TranslationalSymmetry((0,0,-1)))
> #lead[(lat(x,y,z)  for x in range(L) for y in range(W)for z in
> range(H))]=onsite
> #lead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] = hoppingx
> #lead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] = hoppingy
> #lead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] = hoppingz
> #sys.attach_lead(lead)
> #sys.attach_lead(lead.reversed())
> sys = kwant.wraparound.wraparound(sys, keep=None)
> kwant.plot(sys)
> sysf=sys.finalized()
> ham_mat = sysf.hamiltonian_submatrix()
> ev = sla.eigsh(ham_mat, k=31, which='SM')
> evecs = ev[1]
> prob_dens = np.abs(evecs[:, 30])**2
> #print(prob_dens)
> #Sites=list(sysf.sites)
> #rho = kwant.operator.Density(sysf)
> #density = rho(psi)
> #wf_sqr = sum(rho(psi) for psi in wf(0))
>
> On Fri, May 8, 2020 at 3:30 AM Abbout Adel  wrote:
>
>> Sorry, Naveen. I don't have an example ready to use.
>>
>> The idea behind is that the wraparound module helps you in getting the
>> homiltonian for each K point:  H(kx,ky,kz)
>>
>> Diagonalizing it will give you E(kx,ky,kz) which means a point (or few
>> points for a multiband system)
>> the eigenvectors will help you to calculate the density for a given mode.
>>
>> I hope this helps,
>>
>> Adel
>>
>> On Thu, May 7, 2020 at 9:46 PM Naveen Yadav 
>> wrote:
>>
>>> Dear sir,
>>> Could you please provide me an working example of this type?
>>>
>>> Best Regards
>>> Naveen Yadav
>>> Research Scholar
>>> Department of Physics & Astrophysics
>>> University of Delhi
>>> New Delhi-110007
>>>
>>> On Thu, May 7, 2020, 20:37 Abbout Adel  wrote:
>>>
 Hi again,

 I f you want translational symmetry, you need to use wraparound module
 and you will need to find your result only on one unit cell.
 You will have also to do integration on the Brillouin zone.

 I hope this helps
 Adel

 On Thu, May 7, 2020 at 5:12 PM Naveen Yadav 
 wrote:

> Dear sir,
> I understand what you have said.  But how can I maintain translation
> symmetry ?because my system is 3D and for plotting current I access the
> sites of 3D system using *list(sys.sites) *and plot the current for
> 2D slice. Please suggest me.
>
> Best Regards
> Naveen Yadav

Re: [Kwant] discontinuity between lead and scattering region

2020-05-17 Thread Naveen Yadav
Dear sir,
As you said I tried the wraparound module but I got errors while
diagonalizing the system. I don't know how to use this module for 3D system.
Please help. The code is attached below

UserCodeError: Error occurred in user-supplied value function "f".
See the upper part of the above backtrace for more information.


sys=kwant.Builder(kwant.TranslationalSymmetry((0,0,-1)))
lat=kwant.lattice.cubic(norbs=2)
sys[(lat(x,y,0) for x in range(L) for y in range(W))]=onsite
sys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] = hoppingx
sys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] = hoppingy
sys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] = hoppingz

#lead=kwant.Builder(kwant.TranslationalSymmetry((0,0,-1)))
#lead[(lat(x,y,z)  for x in range(L) for y in range(W)for z in
range(H))]=onsite
#lead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] = hoppingx
#lead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] = hoppingy
#lead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] = hoppingz
#sys.attach_lead(lead)
#sys.attach_lead(lead.reversed())
sys = kwant.wraparound.wraparound(sys, keep=None)
kwant.plot(sys)
sysf=sys.finalized()
ham_mat = sysf.hamiltonian_submatrix()
ev = sla.eigsh(ham_mat, k=31, which='SM')
evecs = ev[1]
prob_dens = np.abs(evecs[:, 30])**2
#print(prob_dens)
#Sites=list(sysf.sites)
#rho = kwant.operator.Density(sysf)
#density = rho(psi)
#wf_sqr = sum(rho(psi) for psi in wf(0))

On Fri, May 8, 2020 at 3:30 AM Abbout Adel  wrote:

> Sorry, Naveen. I don't have an example ready to use.
>
> The idea behind is that the wraparound module helps you in getting the
> homiltonian for each K point:  H(kx,ky,kz)
>
> Diagonalizing it will give you E(kx,ky,kz) which means a point (or few
> points for a multiband system)
> the eigenvectors will help you to calculate the density for a given mode.
>
> I hope this helps,
>
> Adel
>
> On Thu, May 7, 2020 at 9:46 PM Naveen Yadav 
> wrote:
>
>> Dear sir,
>> Could you please provide me an working example of this type?
>>
>> Best Regards
>> Naveen Yadav
>> Research Scholar
>> Department of Physics & Astrophysics
>> University of Delhi
>> New Delhi-110007
>>
>> On Thu, May 7, 2020, 20:37 Abbout Adel  wrote:
>>
>>> Hi again,
>>>
>>> I f you want translational symmetry, you need to use wraparound module
>>> and you will need to find your result only on one unit cell.
>>> You will have also to do integration on the Brillouin zone.
>>>
>>> I hope this helps
>>> Adel
>>>
>>> On Thu, May 7, 2020 at 5:12 PM Naveen Yadav 
>>> wrote:
>>>
 Dear sir,
 I understand what you have said.  But how can I maintain translation
 symmetry ?because my system is 3D and for plotting current I access the
 sites of 3D system using *list(sys.sites) *and plot the current for 2D
 slice. Please suggest me.

 Best Regards
 Naveen Yadav
 Research Scholar
 Department of Physics & Astrophysics
 University of Delhi
 New Delhi-110007

 On Thu, May 7, 2020, 19:06 Abbout Adel  wrote:

> Dear Naveen,
>
> What you get is what is expected. You do not have translational
> symmetry.
> Rewrite your code by keeping only two dimensions and you will see why.
>
> I hope this helps,
> Adel
>
>
> On Thu, May 7, 2020 at 12:52 PM Naveen Yadav 
> wrote:
>
>> Dear KWANT Developers,
>> I am trying to plot the current density. The procedure is
>> straightforward. I have attached leads to the scattering region (leads 
>> have
>> same onsite and hopping as of the scattering region) as
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> *sys[(lat(z,y,x) for z in range(H) for y in range(W)for x in
>> range(L))]=onsitesys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
>> hoppingzsys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
>> hoppingysys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
>> hoppingxlead=kwant.Builder(kwant.TranslationalSymmetry((1,0,0)))lead[(lat(z,y,x)
>>  for z in range(H) for y in range(W)for x in
>> range(L))]=onsitelead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
>> hoppingzlead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
>> hoppingylead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
>> hoppingxsys.attach_lead(lead, 
>> add_cells=80)sys.attach_lead(lead.reversed())*
>> [image: image.png]
>> As you can see from the plot there is a discontinuity in the plot at
>> (W=20).  Why it is so even if the scattering region and leads have same
>> onsite and hopping and there is translation symmetry throughout ?
>>
>> --
>> Best Regards,
>> Naveen Yadav
>> Research Scholar
>> Department of Physics & Astrophysics
>> University Of Delhi
>> New Delhi-110007
>>
>
>
> --
> Abbout Adel
>

>>>
>>> --
>>> Abbout Adel
>>>
>>
>
> --
> Abbout Adel
>


-- 
Best Regards,
Naveen Yadav
Research Scholar
Department of Physics & 

Re: [Kwant] discontinuity between lead and scattering region

2020-05-08 Thread Abbout Adel
Sorry, Naveen. I don't have an example ready to use.

The idea behind is that the wraparound module helps you in getting the
homiltonian for each K point:  H(kx,ky,kz)

Diagonalizing it will give you E(kx,ky,kz) which means a point (or few
points for a multiband system)
the eigenvectors will help you to calculate the density for a given mode.

I hope this helps,

Adel

On Thu, May 7, 2020 at 9:46 PM Naveen Yadav 
wrote:

> Dear sir,
> Could you please provide me an working example of this type?
>
> Best Regards
> Naveen Yadav
> Research Scholar
> Department of Physics & Astrophysics
> University of Delhi
> New Delhi-110007
>
> On Thu, May 7, 2020, 20:37 Abbout Adel  wrote:
>
>> Hi again,
>>
>> I f you want translational symmetry, you need to use wraparound module
>> and you will need to find your result only on one unit cell.
>> You will have also to do integration on the Brillouin zone.
>>
>> I hope this helps
>> Adel
>>
>> On Thu, May 7, 2020 at 5:12 PM Naveen Yadav 
>> wrote:
>>
>>> Dear sir,
>>> I understand what you have said.  But how can I maintain translation
>>> symmetry ?because my system is 3D and for plotting current I access the
>>> sites of 3D system using *list(sys.sites) *and plot the current for 2D
>>> slice. Please suggest me.
>>>
>>> Best Regards
>>> Naveen Yadav
>>> Research Scholar
>>> Department of Physics & Astrophysics
>>> University of Delhi
>>> New Delhi-110007
>>>
>>> On Thu, May 7, 2020, 19:06 Abbout Adel  wrote:
>>>
 Dear Naveen,

 What you get is what is expected. You do not have translational
 symmetry.
 Rewrite your code by keeping only two dimensions and you will see why.

 I hope this helps,
 Adel


 On Thu, May 7, 2020 at 12:52 PM Naveen Yadav 
 wrote:

> Dear KWANT Developers,
> I am trying to plot the current density. The procedure is
> straightforward. I have attached leads to the scattering region (leads 
> have
> same onsite and hopping as of the scattering region) as
>
>
>
>
>
>
>
>
>
>
>
> *sys[(lat(z,y,x) for z in range(H) for y in range(W)for x in
> range(L))]=onsitesys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
> hoppingzsys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
> hoppingysys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
> hoppingxlead=kwant.Builder(kwant.TranslationalSymmetry((1,0,0)))lead[(lat(z,y,x)
>  for z in range(H) for y in range(W)for x in
> range(L))]=onsitelead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
> hoppingzlead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
> hoppingylead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
> hoppingxsys.attach_lead(lead, 
> add_cells=80)sys.attach_lead(lead.reversed())*
> [image: image.png]
> As you can see from the plot there is a discontinuity in the plot at
> (W=20).  Why it is so even if the scattering region and leads have same
> onsite and hopping and there is translation symmetry throughout ?
>
> --
> Best Regards,
> Naveen Yadav
> Research Scholar
> Department of Physics & Astrophysics
> University Of Delhi
> New Delhi-110007
>


 --
 Abbout Adel

>>>
>>
>> --
>> Abbout Adel
>>
>

-- 
Abbout Adel


Re: [Kwant] discontinuity between lead and scattering region

2020-05-07 Thread Abbout Adel
Hi again,

I f you want translational symmetry, you need to use wraparound module and
you will need to find your result only on one unit cell.
You will have also to do integration on the Brillouin zone.

I hope this helps
Adel

On Thu, May 7, 2020 at 5:12 PM Naveen Yadav 
wrote:

> Dear sir,
> I understand what you have said.  But how can I maintain translation
> symmetry ?because my system is 3D and for plotting current I access the
> sites of 3D system using *list(sys.sites) *and plot the current for 2D
> slice. Please suggest me.
>
> Best Regards
> Naveen Yadav
> Research Scholar
> Department of Physics & Astrophysics
> University of Delhi
> New Delhi-110007
>
> On Thu, May 7, 2020, 19:06 Abbout Adel  wrote:
>
>> Dear Naveen,
>>
>> What you get is what is expected. You do not have translational symmetry.
>> Rewrite your code by keeping only two dimensions and you will see why.
>>
>> I hope this helps,
>> Adel
>>
>>
>> On Thu, May 7, 2020 at 12:52 PM Naveen Yadav 
>> wrote:
>>
>>> Dear KWANT Developers,
>>> I am trying to plot the current density. The procedure is
>>> straightforward. I have attached leads to the scattering region (leads have
>>> same onsite and hopping as of the scattering region) as
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> *sys[(lat(z,y,x) for z in range(H) for y in range(W)for x in
>>> range(L))]=onsitesys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
>>> hoppingzsys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
>>> hoppingysys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
>>> hoppingxlead=kwant.Builder(kwant.TranslationalSymmetry((1,0,0)))lead[(lat(z,y,x)
>>>  for z in range(H) for y in range(W)for x in
>>> range(L))]=onsitelead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
>>> hoppingzlead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
>>> hoppingylead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
>>> hoppingxsys.attach_lead(lead, add_cells=80)sys.attach_lead(lead.reversed())*
>>> [image: image.png]
>>> As you can see from the plot there is a discontinuity in the plot at
>>> (W=20).  Why it is so even if the scattering region and leads have same
>>> onsite and hopping and there is translation symmetry throughout ?
>>>
>>> --
>>> Best Regards,
>>> Naveen Yadav
>>> Research Scholar
>>> Department of Physics & Astrophysics
>>> University Of Delhi
>>> New Delhi-110007
>>>
>>
>>
>> --
>> Abbout Adel
>>
>

-- 
Abbout Adel


Re: [Kwant] discontinuity between lead and scattering region

2020-05-07 Thread Naveen Yadav
Dear sir,
Could you please provide me an working example of this type?

Best Regards
Naveen Yadav
Research Scholar
Department of Physics & Astrophysics
University of Delhi
New Delhi-110007

On Thu, May 7, 2020, 20:37 Abbout Adel  wrote:

> Hi again,
>
> I f you want translational symmetry, you need to use wraparound module and
> you will need to find your result only on one unit cell.
> You will have also to do integration on the Brillouin zone.
>
> I hope this helps
> Adel
>
> On Thu, May 7, 2020 at 5:12 PM Naveen Yadav 
> wrote:
>
>> Dear sir,
>> I understand what you have said.  But how can I maintain translation
>> symmetry ?because my system is 3D and for plotting current I access the
>> sites of 3D system using *list(sys.sites) *and plot the current for 2D
>> slice. Please suggest me.
>>
>> Best Regards
>> Naveen Yadav
>> Research Scholar
>> Department of Physics & Astrophysics
>> University of Delhi
>> New Delhi-110007
>>
>> On Thu, May 7, 2020, 19:06 Abbout Adel  wrote:
>>
>>> Dear Naveen,
>>>
>>> What you get is what is expected. You do not have translational symmetry.
>>> Rewrite your code by keeping only two dimensions and you will see why.
>>>
>>> I hope this helps,
>>> Adel
>>>
>>>
>>> On Thu, May 7, 2020 at 12:52 PM Naveen Yadav 
>>> wrote:
>>>
 Dear KWANT Developers,
 I am trying to plot the current density. The procedure is
 straightforward. I have attached leads to the scattering region (leads have
 same onsite and hopping as of the scattering region) as











 *sys[(lat(z,y,x) for z in range(H) for y in range(W)for x in
 range(L))]=onsitesys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
 hoppingzsys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
 hoppingysys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
 hoppingxlead=kwant.Builder(kwant.TranslationalSymmetry((1,0,0)))lead[(lat(z,y,x)
  for z in range(H) for y in range(W)for x in
 range(L))]=onsitelead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
 hoppingzlead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
 hoppingylead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
 hoppingxsys.attach_lead(lead, 
 add_cells=80)sys.attach_lead(lead.reversed())*
 [image: image.png]
 As you can see from the plot there is a discontinuity in the plot at
 (W=20).  Why it is so even if the scattering region and leads have same
 onsite and hopping and there is translation symmetry throughout ?

 --
 Best Regards,
 Naveen Yadav
 Research Scholar
 Department of Physics & Astrophysics
 University Of Delhi
 New Delhi-110007

>>>
>>>
>>> --
>>> Abbout Adel
>>>
>>
>
> --
> Abbout Adel
>


Re: [Kwant] discontinuity between lead and scattering region

2020-05-07 Thread Abbout Adel
Dear Naveen,

What you get is what is expected. You do not have translational symmetry.
Rewrite your code by keeping only two dimensions and you will see why.

I hope this helps,
Adel


On Thu, May 7, 2020 at 12:52 PM Naveen Yadav 
wrote:

> Dear KWANT Developers,
> I am trying to plot the current density. The procedure is straightforward.
> I have attached leads to the scattering region (leads have same onsite and
> hopping as of the scattering region) as
>
>
>
>
>
>
>
>
>
>
>
> *sys[(lat(z,y,x) for z in range(H) for y in range(W)for x in
> range(L))]=onsitesys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
> hoppingzsys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
> hoppingysys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
> hoppingxlead=kwant.Builder(kwant.TranslationalSymmetry((1,0,0)))lead[(lat(z,y,x)
>  for z in range(H) for y in range(W)for x in
> range(L))]=onsitelead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
> hoppingzlead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
> hoppingylead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
> hoppingxsys.attach_lead(lead, add_cells=80)sys.attach_lead(lead.reversed())*
> [image: image.png]
> As you can see from the plot there is a discontinuity in the plot at
> (W=20).  Why it is so even if the scattering region and leads have same
> onsite and hopping and there is translation symmetry throughout ?
>
> --
> Best Regards,
> Naveen Yadav
> Research Scholar
> Department of Physics & Astrophysics
> University Of Delhi
> New Delhi-110007
>


-- 
Abbout Adel


Re: [Kwant] discontinuity between lead and scattering region

2020-05-07 Thread Naveen Yadav
Dear sir,
I understand what you have said.  But how can I maintain translation
symmetry ?because my system is 3D and for plotting current I access the
sites of 3D system using *list(sys.sites) *and plot the current for 2D
slice. Please suggest me.

Best Regards
Naveen Yadav
Research Scholar
Department of Physics & Astrophysics
University of Delhi
New Delhi-110007

On Thu, May 7, 2020, 19:06 Abbout Adel  wrote:

> Dear Naveen,
>
> What you get is what is expected. You do not have translational symmetry.
> Rewrite your code by keeping only two dimensions and you will see why.
>
> I hope this helps,
> Adel
>
>
> On Thu, May 7, 2020 at 12:52 PM Naveen Yadav 
> wrote:
>
>> Dear KWANT Developers,
>> I am trying to plot the current density. The procedure is
>> straightforward. I have attached leads to the scattering region (leads have
>> same onsite and hopping as of the scattering region) as
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> *sys[(lat(z,y,x) for z in range(H) for y in range(W)for x in
>> range(L))]=onsitesys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
>> hoppingzsys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
>> hoppingysys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
>> hoppingxlead=kwant.Builder(kwant.TranslationalSymmetry((1,0,0)))lead[(lat(z,y,x)
>>  for z in range(H) for y in range(W)for x in
>> range(L))]=onsitelead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
>> hoppingzlead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
>> hoppingylead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
>> hoppingxsys.attach_lead(lead, add_cells=80)sys.attach_lead(lead.reversed())*
>> [image: image.png]
>> As you can see from the plot there is a discontinuity in the plot at
>> (W=20).  Why it is so even if the scattering region and leads have same
>> onsite and hopping and there is translation symmetry throughout ?
>>
>> --
>> Best Regards,
>> Naveen Yadav
>> Research Scholar
>> Department of Physics & Astrophysics
>> University Of Delhi
>> New Delhi-110007
>>
>
>
> --
> Abbout Adel
>


[Kwant] discontinuity between lead and scattering region

2020-05-07 Thread Naveen Yadav
Dear KWANT Developers,
I am trying to plot the current density. The procedure is straightforward.
I have attached leads to the scattering region (leads have same onsite and
hopping as of the scattering region) as











*sys[(lat(z,y,x) for z in range(H) for y in range(W)for x in
range(L))]=onsitesys[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
hoppingzsys[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
hoppingysys[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
hoppingxlead=kwant.Builder(kwant.TranslationalSymmetry((1,0,0)))lead[(lat(z,y,x)
 for z in range(H) for y in range(W)for x in
range(L))]=onsitelead[kwant.builder.HoppingKind((1, 0, 0), lat, lat)] =
hoppingzlead[kwant.builder.HoppingKind((0, 1, 0), lat, lat)] =
hoppingylead[kwant.builder.HoppingKind((0, 0, 1), lat, lat)] =
hoppingxsys.attach_lead(lead, add_cells=80)sys.attach_lead(lead.reversed())*
[image: image.png]
As you can see from the plot there is a discontinuity in the plot at
(W=20).  Why it is so even if the scattering region and leads have same
onsite and hopping and there is translation symmetry throughout ?

-- 
Best Regards,
Naveen Yadav
Research Scholar
Department of Physics & Astrophysics
University Of Delhi
New Delhi-110007